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类回文元件伽利略属于DNA转座子的P超家族,在果蝇属中广泛存在。

The Foldback-like element Galileo belongs to the P superfamily of DNA transposons and is widespread within the Drosophila genus.

作者信息

Marzo Mar, Puig Marta, Ruiz Alfredo

机构信息

Departament de Genètica i de Microbiologia, Universitat Autònoma de Barcelona, Bellaterra, 08193 Barcelona, Spain.

出版信息

Proc Natl Acad Sci U S A. 2008 Feb 26;105(8):2957-62. doi: 10.1073/pnas.0712110105. Epub 2008 Feb 19.

Abstract

Galileo is the only transposable element (TE) known to have generated natural chromosomal inversions in the genus Drosophila. It was discovered in Drosophila buzzatii and classified as a Foldback-like element because of its long, internally repetitive, terminal inverted repeats (TIRs) and lack of coding capacity. Here, we characterized a seemingly complete copy of Galileo from the D. buzzatii genome. It is 5,406 bp long, possesses 1,229-bp TIRs, and encodes a 912-aa transposase similar to those of the Drosophila melanogaster 1360 (Hoppel) and P elements. We also searched the recently available genome sequences of 12 Drosophila species for elements similar to Dbuz\Galileo by using bioinformatic tools. Galileo was found in six species (ananassae, willistoni, peudoobscura, persimilis, virilis, and mojavensis) from the two main lineages within the Drosophila genus. Our observations place Galileo within the P superfamily of cut-and-paste transposons and extend considerably its phylogenetic distribution. The interspecific distribution of Galileo indicates an ancient presence in the genus, but the phylogenetic tree built with the transposase amino acid sequences contrasts significantly with that of the species, indicating lineage sorting and/or horizontal transfer events. Our results also suggest that Foldback-like elements such as Galileo may evolve from DNA-based transposon ancestors by loss of the transposase gene and disproportionate elongation of TIRs.

摘要

伽利略是已知在果蝇属中产生自然染色体倒位的唯一转座元件(TE)。它在果蝇中被发现,并因其长的、内部重复的末端反向重复序列(TIR)和缺乏编码能力而被归类为类回文元件。在这里,我们对果蝇基因组中一个看似完整的伽利略拷贝进行了表征。它长5406 bp,拥有1229 bp的TIR,并编码一种912个氨基酸的转座酶,类似于黑腹果蝇1360(霍佩尔)和P元件的转座酶。我们还使用生物信息学工具在最近获得的12种果蝇的基因组序列中搜索与Dbuz\伽利略相似的元件。在果蝇属内两个主要谱系的六个物种(阿纳纳斯果蝇、威利斯顿果蝇、拟暗果蝇、佩尔西米利斯果蝇、维里利斯果蝇和莫哈韦果蝇)中发现了伽利略元件。我们的观察结果将伽利略元件置于剪切粘贴转座子的P超家族中,并大大扩展了其系统发育分布。伽利略元件的种间分布表明它在该属中存在已久,但用转座酶氨基酸序列构建的系统发育树与物种的系统发育树有显著差异,表明存在谱系分选和/或水平转移事件。我们的结果还表明,像伽利略这样的类回文元件可能是通过转座酶基因的丢失和TIR的不成比例延长从基于DNA的转座子祖先进化而来的。

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