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核糖体在翻译延伸过程中构象变化的分子动力学模拟研究。

Conformational changes of ribosomes during translation elongation resolved by molecular dynamics simulations.

机构信息

Department of Chemistry and Biochemistry, University of Arkansas, Fayetteville, AR, 72701, USA. Electronic address: https://twitter.com/atomcellplankl.

Department of Chemistry and Biochemistry, University of Arkansas, Fayetteville, AR, 72701, USA; Cell and Molecular Biology Program, University of Arkansas, Fayetteville, AR, 72701, USA.

出版信息

Curr Opin Struct Biol. 2024 Jun;86:102804. doi: 10.1016/j.sbi.2024.102804. Epub 2024 Apr 3.

Abstract

Molecular dynamics simulations have emerged as a powerful set of tools to unravel the intricate dynamics of ribosomes during protein synthesis. Recent advancements in this field have enabled simulations to delve deep into the conformational rearrangements of ribosomes and associated factors, providing invaluable insights into the intricacies of translation. Emphasis on simulations has recently been on translation elongation, such as tRNA selection, translocation, and ribosomal head-swivel motions. These studies have offered crucial structural interpretations of how genetic information is faithfully translated into proteins. This review outlines recent discoveries concerning ribosome conformational changes occurring during translation elongation, as elucidated through molecular dynamics simulations.

摘要

分子动力学模拟已成为揭示蛋白质合成过程中核糖体复杂动力学的强大工具。该领域的最新进展使得模拟能够深入研究核糖体和相关因子的构象重排,为翻译的复杂性提供了宝贵的见解。最近的模拟重点是翻译延伸,例如 tRNA 的选择、易位和核糖体头部旋转运动。这些研究提供了关于遗传信息如何忠实地翻译成蛋白质的关键结构解释。本文综述了通过分子动力学模拟阐明的翻译延伸过程中核糖体构象变化的最新发现。

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