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基于分类的自适应分割流水线:使用多囊肝和结直肠癌 CT 图像的可行性研究。

A Classification-Based Adaptive Segmentation Pipeline: Feasibility Study Using Polycystic Liver Disease and Metastases from Colorectal Cancer CT Images.

机构信息

Department of Radiology, Mayo Clinic, Rochester, MN, USA.

出版信息

J Imaging Inform Med. 2024 Oct;37(5):2186-2194. doi: 10.1007/s10278-024-01072-3. Epub 2024 Apr 8.

DOI:10.1007/s10278-024-01072-3
PMID:38587766
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11522206/
Abstract

Automated segmentation tools often encounter accuracy and adaptability issues when applied to images of different pathology. The purpose of this study is to explore the feasibility of building a workflow to efficiently route images to specifically trained segmentation models. By implementing a deep learning classifier to automatically classify the images and route them to appropriate segmentation models, we hope that our workflow can segment the images with different pathology accurately. The data we used in this study are 350 CT images from patients affected by polycystic liver disease and 350 CT images from patients presenting with liver metastases from colorectal cancer. All images had the liver manually segmented by trained imaging analysts. Our proposed adaptive segmentation workflow achieved a statistically significant improvement for the task of total liver segmentation compared to the generic single-segmentation model (non-parametric Wilcoxon signed rank test, n = 100, p-value << 0.001). This approach is applicable in a wide range of scenarios and should prove useful in clinical implementations of segmentation pipelines.

摘要

自动化分割工具在应用于不同病理学的图像时,常常会遇到准确性和适应性方面的问题。本研究旨在探讨构建一种工作流程,以便将图像有效地分配到专门训练的分割模型的可行性。通过实现一个深度学习分类器来自动对图像进行分类,并将其路由到适当的分割模型,我们希望我们的工作流程能够准确地对具有不同病理学的图像进行分割。我们在这项研究中使用的数据是 350 张来自患有多囊肝疾病的患者的 CT 图像和 350 张来自患有结直肠癌肝转移的患者的 CT 图像。所有图像均由经过培训的成像分析师手动分割肝脏。与通用的单分割模型相比,我们提出的自适应分割工作流程在总肝分割任务方面取得了统计学上的显著改善(非参数 Wilcoxon 符号秩检验,n=100,p 值<<0.001)。这种方法适用于广泛的场景,应该在分割管道的临床实施中证明是有用的。

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本文引用的文献

1
One model is all you need: Multi-task learning enables simultaneous histology image segmentation and classification.一个模型便足矣:多任务学习可实现组织学图像的同时分割与分类。
Med Image Anal. 2023 Jan;83:102685. doi: 10.1016/j.media.2022.102685. Epub 2022 Nov 11.
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Multi-pathology detection and lesion localization in WCE videos by using the instance segmentation approach.使用实例分割方法进行 WCE 视频中的多病理学检测和病变定位。
Artif Intell Med. 2021 Sep;119:102141. doi: 10.1016/j.artmed.2021.102141. Epub 2021 Aug 10.
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Multi-task learning for segmentation and classification of tumors in 3D automated breast ultrasound images.多任务学习在三维自动化乳腺超声图像中肿瘤的分割和分类。
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nnU-Net: a self-configuring method for deep learning-based biomedical image segmentation.nnU-Net:一种基于深度学习的生物医学图像分割的自配置方法。
Nat Methods. 2021 Feb;18(2):203-211. doi: 10.1038/s41592-020-01008-z. Epub 2020 Dec 7.
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Complete abdomen and pelvis segmentation using U-net variant architecture.使用U-net变体架构进行全腹部和骨盆分割。
Med Phys. 2020 Nov;47(11):5609-5618. doi: 10.1002/mp.14422. Epub 2020 Oct 7.
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Hepatic Metastasis from Colorectal Cancer.结直肠癌肝转移
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Clinical profile of autosomal dominant polycystic liver disease.常染色体显性遗传性多囊肝病的临床特征
Hepatology. 2003 Jan;37(1):164-71. doi: 10.1053/jhep.2003.50006.
9
Hepatic metastases from colorectal cancer: preoperative detection and assessment of resectability with helical CT.结直肠癌肝转移:螺旋CT术前检测及可切除性评估
Radiology. 2001 Jan;218(1):55-60. doi: 10.1148/radiology.218.1.r01dc1155.
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Combined cystic disease of the liver and kidney.肝肾联合性囊肿病
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