Department of Entomology, China Agricultural University, Beijing, 100193, China.
College of Plant Protection, Hebei Agricultural University, Baoding, 071001, China.
Sci Data. 2024 Apr 8;11(1):351. doi: 10.1038/s41597-024-03194-3.
Acanthacorydalis orientalis (McLachlan, 1899) (Megaloptera: Corydalidae) is an important freshwater-benthic invertebrate species that serves as an indicator for water-quality biomonitoring and is valuable for conservation from East Asia. Here, a high-quality reference genome for A. orientalis was constructed using Oxford Nanopore sequencing and High throughput Chromosome Conformation Capture (Hi-C) technology. The final genome size is 547.98 Mb, with the N50 values of contig and scaffold being 7.77 Mb and 50.53 Mb, respectively. The longest contig and scaffold are 20.57 Mb and 62.26 Mb in length, respectively. There are 99.75% contigs anchored onto 13 pseudo-chromosomes. Benchmarking Universal Single-Copy Orthologs (BUSCO) analysis showed that the completeness of the genome assembly is 99.01%. There are 10,977 protein-coding genes identified, of which 84.00% are functionally annotated. The genome contains 44.86% repeat sequences. This high-quality genome provides substantial data for future studies on population genetics, aquatic adaptation, and evolution of Megaloptera and other related insect groups.
东方刺尾虫(McLachlan, 1899)(脉翅目:齿蛉科)是一种重要的淡水底栖无脊椎动物物种,可用作水质生物监测的指示物,对东亚地区的保护具有重要价值。本文利用牛津纳米孔测序和高通量染色体构象捕获(Hi-C)技术构建了东方刺尾虫的高质量参考基因组。最终基因组大小为 547.98 Mb,contig 和 scaffold 的 N50 值分别为 7.77 Mb 和 50.53 Mb。最长的 contig 和 scaffold 分别为 20.57 Mb 和 62.26 Mb。有 99.75%的 contig 锚定在 13 条假染色体上。基准通用单拷贝同源基因(BUSCO)分析表明,基因组组装的完整性为 99.01%。共鉴定出 10977 个蛋白编码基因,其中 84.00%具有功能注释。基因组包含 44.86%的重复序列。该高质量基因组为未来研究脉翅目和其他相关昆虫类群的种群遗传学、水生适应性和进化提供了大量数据。