Simusika Paul, Okamoto Michiko, Dapat Clyde, Muleya Walter, Malisheni Moffat, Azam Sikandar, Imamura Takeaki, Saito Mayuko, Mwape Innocent, Mpabalwani Evans, Monze Mwaka, Oshitani Hitoshi
Tohoku University Graduate School of Medicine, Department of Virology, Sendai, Japan.
University Teaching Hospitals, Pathology and Microbiology Department, Virology Laboratory, Lusaka, Zambia.
IJID Reg. 2024 Mar 21;11:100354. doi: 10.1016/j.ijregi.2024.03.009. eCollection 2024 Jun.
Annual outbreaks of human respiratory syncytial virus (HRSV) are caused by newly introduced and locally persistent strains. During the COVID-19 pandemic, global and local circulation of HRSV significantly decreased. This study was conducted to characterize HRSV in 2018-2022 and to analyze the impact of COVID-19 on the evolution of HRSV.
DESIGN/METHODS: Combined oropharyngeal and nasopharyngeal swabs were collected from children hospitalized with severe acute respiratory infection at two hospitals in Zambia. The second hypervariable region of the attachment gene G was targeted for phylogenetic analysis.
Of 3113 specimens, 504 (16.2%) were positive for HRSV, of which 131 (26.0%) and 66 (13.1%) were identified as HRSVA and HRSVB, respectively. In early 2021, an increase in HRSV was detected, caused by multiple distinct clades of HRSVA and HRSVB. Some were newly introduced, whereas others resulted from local persistence.
This study provides insights into the evolution of HRSV, driven by global and local circulation. The COVID-19 pandemic had a temporal impact on the evolution pattern of HRSV. Understanding the evolution of HRSV is vital for developing strategies for its control.
人类呼吸道合胞病毒(HRSV)的年度暴发是由新引入的毒株和本地持续存在的毒株引起的。在新冠疫情期间,HRSV的全球和本地传播显著减少。本研究旨在对2018 - 2022年的HRSV进行特征分析,并分析新冠疫情对HRSV进化的影响。
设计/方法:从赞比亚两家医院因严重急性呼吸道感染住院的儿童中采集口咽和鼻咽联合拭子。针对附着基因G的第二个高变区进行系统发育分析。
在3113份标本中,504份(16.2%)HRSV呈阳性,其中131份(26.0%)和66份(13.1%)分别被鉴定为HRSVA和HRSVB。2021年初,检测到HRSV有所增加,这是由HRSVA和HRSVB的多个不同分支引起的。一些是新引入的,而另一些是本地持续存在的毒株导致的。
本研究深入了解了由全球和本地传播驱动的HRSV的进化情况。新冠疫情对HRSV的进化模式产生了阶段性影响。了解HRSV的进化对于制定其控制策略至关重要。