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计算药物再利用方法:方法、挑战和机遇。

Computational Approaches to Drug Repurposing: Methods, Challenges, and Opportunities.

机构信息

Department of Biomedical Data Science, Stanford University, Stanford, California, USA; email:

Departments of Genetics, Medicine, and Bioengineering, Stanford University, Stanford, California, USA.

出版信息

Annu Rev Biomed Data Sci. 2024 Aug;7(1):15-29. doi: 10.1146/annurev-biodatasci-110123-025333. Epub 2024 Jul 24.


DOI:10.1146/annurev-biodatasci-110123-025333
PMID:38598857
Abstract

Drug repurposing refers to the inference of therapeutic relationships between a clinical indication and existing compounds. As an emerging paradigm in drug development, drug repurposing enables more efficient treatment of rare diseases, stratified patient populations, and urgent threats to public health. However, prioritizing well-suited drug candidates from among a nearly infinite number of repurposing options continues to represent a significant challenge in drug development. Over the past decade, advances in genomic profiling, database curation, and machine learning techniques have enabled more accurate identification of drug repurposing candidates for subsequent clinical evaluation. This review outlines the major methodologic classes that these approaches comprise, which rely on () protein structure, () genomic signatures, () biological networks, and () real-world clinical data. We propose that realizing the full impact of drug repurposing methodologies requires a multidisciplinary understanding of each method's advantages and limitations with respect to clinical practice.

摘要

药物重定位是指在临床适应症和现有化合物之间推断治疗关系。作为药物开发中的一个新兴范例,药物重定位使治疗罕见疾病、分层患者群体和应对公共卫生紧急威胁的效率更高。然而,从几乎无限数量的重定位选择中确定合适的药物候选物仍然是药物开发中的一个重大挑战。在过去的十年中,基因组分析、数据库管理和机器学习技术的进步使更准确地识别药物重定位候选物以进行后续临床评估成为可能。这篇综述概述了这些方法所包含的主要方法类别,这些类别依赖于 () 蛋白质结构、() 基因组特征、() 生物网络和 () 真实世界的临床数据。我们认为,要充分发挥药物重定位方法的作用,需要对每种方法在临床实践中的优缺点有一个多学科的理解。

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