Liao Jia-Hao, Chen Shi, Liu Di, Zhang Jing-Jing, Liu Yi-Fei
School of Pharmacy, Hubei University of Chinese Medicine Wuhan 430065, China.
Zhongguo Zhong Yao Za Zhi. 2024 Feb;49(3):702-716. doi: 10.19540/j.cnki.cjcmm.20231115.102.
Uridine diphosphate glycosyltransferase(UGT) is involved in the glycosylation of a variety of secondary metabolites in plants and plays an important role in plant growth and development and regulation of secondary metabolism. Based on the genome of a diploid Chrysanthemum indicum, the UGT gene family from Ch. indicum was identified by bioinformatics methods, and the physical and chemical properties, subcellular localization prediction, conserved motif, phylogeny, chromosome location, gene structure, and gene replication events of UGT protein were analyzed. Transcriptome and real-time fluorescence quantitative polymerase chain reaction(PCR) were used to analyze the expression pattern of the UGT gene in flowers and leaves of Ch. indicum. Quasi-targeted metabolomics was used to analyze the differential metabolites in flowers and leaves. The results showed that a total of 279 UGT genes were identified in the Ch. indicum genome. Phylogenetic analysis showed that these UGT genes were divided into 8 subfamilies. Members of the same subfamily were distributed in clusters on the chromosomes. Tandem duplications were the main driver of the expansion of the UGT gene family from Ch. indicum. Structural domain analysis showed that 262 UGT genes had complete plant secondary metabolism signal sequences(PSPG box). The analysis of cis-acting elements indicated that light-responsive elements were the most ubiquitous elements in the promoter regions of UGT gene family members. Quasi-targeted metabolome analysis of floral and leaf tissue revealed that most of the flavonoid metabolites, including luteolin-7-O-glucoside and kaempferol-7-O-glucoside, had higher accumulation in flowers. Comparative transcriptome analysis of flower and leaf tissue showed that there were 72 differentially expressed UGT genes, of which 29 genes were up-regulated in flowers, and 43 genes were up-regulated in leaves. Correlation network and phylogenetic analysis showed that CindChr9G00614970.1, CindChr2G00092510.1, and CindChr2G00092490.1 may be involved in the synthesis of 7-O-flavonoid glycosides in Ch. indicum, and real-time fluorescence quantitative PCR analysis further confirmed the reliability of transcriptome data. The results of this study are helpful to understand the function of the UGT gene family from Ch. indicum and provide data reference and theoretical basis for further study on the molecular regulation mechanism of flavonoid glycosides synthesis in Ch. indicum.
尿苷二磷酸糖基转移酶(UGT)参与植物中多种次生代谢产物的糖基化过程,在植物生长发育和次生代谢调控中发挥重要作用。基于二倍体野菊花的基因组,通过生物信息学方法鉴定了野菊花中的UGT基因家族,并分析了UGT蛋白的理化性质、亚细胞定位预测、保守基序、系统发育、染色体定位、基因结构和基因复制事件。利用转录组和实时荧光定量聚合酶链反应(PCR)分析了UGT基因在野菊花和叶中的表达模式。采用准靶向代谢组学分析花和叶中的差异代谢物。结果表明,在野菊花基因组中共鉴定出279个UGT基因。系统发育分析表明,这些UGT基因分为8个亚家族。同一亚家族的成员在染色体上成簇分布。串联重复是野菊花UGT基因家族扩张的主要驱动力。结构域分析表明,262个UGT基因具有完整的植物次生代谢信号序列(PSPG盒)。顺式作用元件分析表明,光响应元件是UGT基因家族成员启动子区域中最普遍存在的元件。花和叶组织的准靶向代谢组分析表明,大多数黄酮类代谢物,包括木犀草素-7-O-葡萄糖苷和山奈酚-7-O-葡萄糖苷,在花中的积累量更高。花和叶组织的比较转录组分析表明,有72个差异表达的UGT基因,其中29个基因在花中上调,43个基因在叶中上调。相关性网络和系统发育分析表明,CindChr9G0061497, CindChr2G00092510.1和CindChr2G00092490.1可能参与野菊花中7-O-黄酮糖苷的合成,实时荧光定量PCR分析进一步证实了转录组数据的可靠性。本研究结果有助于了解野菊花UGT基因家族的功能,为进一步研究野菊花黄酮糖苷合成的分子调控机制提供数据参考和理论依据。