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基因组范围内鉴定和栎属糖基转移酶基因家族 1 的表达分析

Genome-wide identification and expression analysis of glycosyltransferase gene family 1 in Quercus robur L.

机构信息

College of Life Science, North China University of Science and Technology, Tangshan, Hebei, China.

出版信息

J Appl Genet. 2021 Dec;62(4):559-570. doi: 10.1007/s13353-021-00650-3. Epub 2021 Jul 9.

DOI:10.1007/s13353-021-00650-3
PMID:34241817
Abstract

Glycosyltransferase gene family 1, also known as uridine diphosphate glycosyltransferase (UGT), is the largest glycosyltransferase family in plants, playing a vital role in their growth and development. In this study, 244 UGT genes with conserved PSPG motifs were identified in the genome of Quercus robur L. The collinearity analysis results showed that tandem repeat was the main way of UGT genes expansion in Q. robur, with 21 groups of 55 tandem repeat genes. UGT genes were divided into 15 subgroups A-P; group K was lost, and the gene structure and conserved domain of the same subgroup were basically the same. Cis-element analysis showed that upstream 2,000 bp promoter sequence of UGT genes contained light response elements, plant hormone response elements, and stress-related cis-elements, which indicated that UGT genes of Q. robur might be regulated by various metabolic pathways. In particular, some UGTs in group L of Q. robur contained a conserved promoter structure. The expression pattern analysis results demonstrated that UGT genes of groups B, D, E, and I were differentially expressed under Tortrix viridana L. stress. The expression of UGTs in group E decreased under stress, the expression of group L increased, and that of genes in groups D and B were different. The functions of UGT genes in E and L groups are relatively conservative, and their functions may also conserve among species. The study results have a particular reference value for further research on the function of Q. robur UGT genes.

摘要

糖基转移酶基因家族 1,也称为尿苷二磷酸糖基转移酶(UGT),是植物中最大的糖基转移酶家族,在其生长和发育中起着至关重要的作用。本研究在麻栎基因组中鉴定到 244 个具有保守 PSPG 基序的 UGT 基因。共线性分析结果表明,串联重复是 UGT 基因在麻栎中扩张的主要方式,有 21 组 55 个串联重复基因。UGT 基因被分为 15 个亚组 A-P;亚组 K 丢失,相同亚组的基因结构和保守域基本相同。顺式作用元件分析表明,UGT 基因上游 2000bp 启动子序列含有光响应元件、植物激素响应元件和应激相关顺式元件,表明 UGT 基因可能受到各种代谢途径的调控。特别是,麻栎 L 亚组中的一些 UGT 包含保守的启动子结构。表达模式分析结果表明,在云斑天牛胁迫下,B、D、E 和 I 亚组的 UGT 基因表达存在差异。E 亚组的 UGT 基因在胁迫下表达减少,L 亚组的 UGT 基因表达增加,而 D 亚组和 B 亚组的基因表达则不同。E 和 L 亚组的 UGT 基因功能相对保守,其功能在物种间也可能保守。该研究结果对进一步研究麻栎 UGT 基因的功能具有特殊的参考价值。

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