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免疫细胞浸润调控网络在椎间盘退变中的作用:基于 hdWGCNA 和单细胞生物信息学分析

The Role of Immunocyte Infiltration Regulatory Network Based on hdWGCNA and Single-Cell Bioinformatics Analysis in Intervertebral Disc Degeneration.

机构信息

Department of Spinal Surgery, First Affiliated Hospital of Harbin Medical University, No.23 Youzheng Street, Harbin, 150001, China.

出版信息

Inflammation. 2024 Dec;47(6):1987-1999. doi: 10.1007/s10753-024-02020-7. Epub 2024 Apr 17.

Abstract

Immune infiltration plays a crucial role in intervertebral disc degeneration (IDD). In this study, we explored the immune microenvironment of IDD through single-cell bioinformatics analysis. Three single-cell datasets were integrated into this study. Nucleus pulposus cells (NPCs) were divided into subgroups based on characteristic genes, and the role of each subgroup in the IDD process was analyzed through pseudo-time trajectory analysis. The hub genes were obtained using hdWGCNA, further identified by bulk datasets and pseudo-time sequence. The expression of the hub genes defined the NPCs related to immune infiltration, and the interaction between these NPCs and immunocytes was explored. The NPCs were divided into four subgroups: reserve NPCs, HCL-NPCs, response NPCs, and support NPCs, which, respectively, dominate the four processes of IDD: non, mild, moderate, and severe degeneration. SPP1 and ICAM1 were identified as the nucleus pulposus immune infiltration hub genes. Macrophages and myelocytes played pro-inflammatory roles in the SPP1-ICAM both-up NPC group through the SPP1-CD44 pathway and ICAM1-ITGB2 ligand-receptor pathway, respectively. At the same time, both-up NPCs sought self-help inflammation remission from neutrophils through the ANXA1-FPR1 pathway. The systematic analysis of the differentiation and immune infiltration landscapes helps to understand IDD's overall development process. Our data suggest that SPP1 and ICAM1 may be new targets for the treatment of inflammatory infiltration in IDD.

摘要

免疫浸润在椎间盘退变(IDD)中起着至关重要的作用。在这项研究中,我们通过单细胞生物信息学分析来探索 IDD 的免疫微环境。整合了三个单细胞数据集进行本研究。根据特征基因将髓核细胞(NPC)分为亚群,并通过伪时间轨迹分析分析每个亚群在 IDD 过程中的作用。使用 hdWGCNA 获得枢纽基因,进一步通过批量数据集和伪时间序列进行鉴定。枢纽基因定义了与免疫浸润相关的 NPC,并探索了这些 NPC 与免疫细胞之间的相互作用。NPC 分为四个亚群:储备 NPC、HCL-NPC、反应 NPC 和支持 NPC,分别主导 IDD 的四个过程:无、轻度、中度和重度退变。鉴定出 SPP1 和 ICAM1 为椎间盘免疫浸润的枢纽基因。巨噬细胞和髓样细胞通过 SPP1-CD44 途径和 ICAM1-ITGB2 配体-受体途径在 SPP1-ICAM1 双上调 NPC 组中发挥促炎作用,同时,双上调 NPC 通过 ANXA1-FPR1 途径从嗜中性粒细胞寻求自身炎症缓解。对分化和免疫浸润景观的系统分析有助于了解 IDD 的整体发展过程。我们的数据表明,SPP1 和 ICAM1 可能成为治疗 IDD 炎症浸润的新靶点。

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