核酸与新冠病毒N蛋白的比例狭窄会导致相分离。

A narrow ratio of nucleic acid to SARS-CoV-2 N-protein enables phase separation.

作者信息

Laughlin Patrick M, Young Kimberly, Gonzalez-Gutierrez Giovanni, Wang Joseph C Y, Zlotnick Adam

机构信息

Department of Molecular and Cellular Biochemistry, Indiana University.

Department of Microbiology and Immunology, Pennsylvania State University College of Medicine.

出版信息

bioRxiv. 2024 Apr 11:2024.04.10.588883. doi: 10.1101/2024.04.10.588883.

Abstract

SARS-CoV-2 Nucleocapsid protein () is a viral structural protein that packages the 30kb genomic RNA inside virions and forms condensates within infected cells through liquid-liquid phase separation (). N, in both soluble and condensed forms, has accessory roles in the viral life cycle including genome replication and immunosuppression. The ability to perform these tasks depends on phase separation and its reversibility. The conditions that stabilize and destabilize N condensates and the role of N-N interactions are poorly understood. We have investigated LLPS formation and dissolution in a minimalist system comprised of N protein and an ssDNA oligomer just long enough to support assembly. The short oligo allows us to focus on the role of N-N interaction. We have developed a sensitive FRET assay to interrogate LLPS assembly reactions from the perspective of the oligonucleotide. We find that N alone can form oligomers but that oligonucleotide enables their assembly into a three-dimensional phase. At a ~1:1 ratio of N to oligonucleotide LLPS formation is maximal. We find that a modest excess of N or of nucleic acid causes the LLPS to break down catastrophically. Under the conditions examined here assembly has a critical concentration of about 1 μM. The responsiveness of N condensates to their environment may have biological consequences. A better understanding of how nucleic acid modulates N-N association will shed light on condensate activity and could inform antiviral strategies targeting LLPS.

摘要

严重急性呼吸综合征冠状病毒2核衣壳蛋白()是一种病毒结构蛋白,它将30kb的基因组RNA包装在病毒粒子内部,并通过液-液相分离()在受感染细胞内形成凝聚物。N蛋白以可溶形式和凝聚形式在病毒生命周期中发挥辅助作用,包括基因组复制和免疫抑制。执行这些任务的能力取决于相分离及其可逆性。目前对稳定和破坏N凝聚物的条件以及N-N相互作用的作用了解甚少。我们研究了由N蛋白和一条长度刚好足以支持组装的单链DNA寡聚物组成的极简系统中的液-液相分离的形成和溶解。这条短寡聚物使我们能够专注于N-N相互作用的作用。我们开发了一种灵敏的荧光共振能量转移(FRET)测定法,从寡核苷酸的角度研究液-液相分离的组装反应。我们发现单独的N蛋白可以形成寡聚物,但寡核苷酸能使其组装成三维相。当N蛋白与寡核苷酸的比例约为1:1时,液-液相分离的形成达到最大值。我们发现适度过量的N蛋白或核酸会导致液-液相分离灾难性地分解。在此处研究的条件下,组装的临界浓度约为1μM。N凝聚物对其环境的响应性可能具有生物学后果。更好地理解核酸如何调节N-N缔合将有助于阐明凝聚物的活性,并可能为针对液-液相分离的抗病毒策略提供信息。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bdcb/11030382/f8e2deef71ea/nihpp-2024.04.10.588883v1-f0001.jpg

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