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A narrow ratio of nucleic acid to SARS-CoV-2 N-protein enables phase separation.

作者信息

Laughlin Patrick M, Young Kimberly, Gonzalez-Gutierrez Giovanni, Wang Joseph C-Y, Zlotnick Adam

机构信息

Department of Molecular and Cellular Biochemistry, Indiana University, Bloomington, Indiana, USA.

Department of Microbiology and Immunology, Pennsylvania State University College of Medicine, Hershey, Pennsylvania, USA.

出版信息

J Biol Chem. 2024 Nov;300(11):107831. doi: 10.1016/j.jbc.2024.107831. Epub 2024 Sep 27.


DOI:10.1016/j.jbc.2024.107831
PMID:39343003
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11541828/
Abstract

SARS-CoV-2 Nucleocapsid protein (N) is a viral structural protein that packages the 30 kb genomic RNA inside virions and forms condensates within infected cells through liquid-liquid phase separation (LLPS). In both soluble and condensed forms, N has accessory roles in the viral life cycle including genome replication and immunosuppression. The ability to perform these tasks depends on phase separation and its reversibility. The conditions that stabilize and destabilize N condensates and the role of N-N interactions are poorly understood. We have investigated LLPS formation and dissolution in a minimalist system comprised of N protein and an ssDNA oligomer just long enough to support assembly. The short oligo allows us to focus on the role of N-N interaction. We have developed a sensitive FRET assay to interrogate LLPS assembly reactions from the perspective of the oligonucleotide. We find that N alone can form oligomers but that oligonucleotide enables their assembly into a three-dimensional phase. At a ∼1:1 ratio of N to oligonucleotide, LLPS formation is maximal. We find that a modest excess of N or of nucleic acid causes the LLPS to break down catastrophically. Under the conditions examined here, assembly has a critical concentration of about 1 μM. The responsiveness of N condensates to their environment may have biological consequences. A better understanding of how nucleic acid modulates N-N association will shed light on condensate activity and could inform antiviral strategies targeting LLPS.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed0c/11541828/fcc65677ce79/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed0c/11541828/916254c61167/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed0c/11541828/c31282861620/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed0c/11541828/88a552a3bf9a/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed0c/11541828/b82796452440/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed0c/11541828/fcc65677ce79/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed0c/11541828/916254c61167/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed0c/11541828/c31282861620/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed0c/11541828/88a552a3bf9a/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed0c/11541828/b82796452440/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed0c/11541828/fcc65677ce79/gr5.jpg

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[1]
A narrow ratio of nucleic acid to SARS-CoV-2 N-protein enables phase separation.

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A narrow ratio of nucleic acid to SARS-CoV-2 N-protein enables phase separation.

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本文引用的文献

[1]
Assembly of SARS-CoV-2 ribonucleosomes by truncated N variant of the nucleocapsid protein.

J Biol Chem. 2023-12

[2]
SARS-CoV-2 nucleocapsid protein inhibits the PKR-mediated integrated stress response through RNA-binding domain N2b.

PLoS Pathog. 2023-8

[3]
Impaired systemic nucleocapsid antigen clearance in severe COVID-19.

J Med Virol. 2023-8

[4]
Self-assembly coupled to liquid-liquid phase separation.

PLoS Comput Biol. 2023-5

[5]
A conserved oligomerization domain in the disordered linker of coronavirus nucleocapsid proteins.

Sci Adv. 2023-4-5

[6]
Liquid-liquid phase separation of nucleocapsid proteins during SARS-CoV-2 and HIV-1 replication.

Cell Rep. 2023-1-31

[7]
The SARS-CoV-2 nucleocapsid protein: its role in the viral life cycle, structure and functions, and use as a potential target in the development of vaccines and diagnostics.

Virol J. 2023-1-10

[8]
Early administration of Paxlovid reduces the viral elimination time in patients infected with SARS-CoV-2 Omicron variants.

J Med Virol. 2023-1

[9]
Structural domains of SARS-CoV-2 nucleocapsid protein coordinate to compact long nucleic acid substrates.

Nucleic Acids Res. 2023-1-11

[10]
Electron cryotomography of SARS-CoV-2 virions reveals cylinder-shaped particles with a double layer RNP assembly.

Commun Biol. 2022-11-10

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