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微小RNA是一个经典进化热点基因座的效应基因。

A micro-RNA is the effector gene of a classic evolutionary hotspot locus.

作者信息

Tian Shen, Asano Yoshimasa, Banerjee Tirtha Das, Wee Jocelyn Liang Qi, Lamb Abigail, Wang Yehan, Murugesan Suriya Narayanan, Ui-Tei Kumiko, Wittkopp Patricia J, Monteiro Antónia

机构信息

Department of Biological Sciences, Faculty of Science, National University of Singapore; Singapore, 117543, Singapore.

Department of Biological Sciences, Graduate School of Science, The University of Tokyo; Tokyo, 113-0033, Japan.

出版信息

bioRxiv. 2024 Apr 18:2024.02.09.579741. doi: 10.1101/2024.02.09.579741.

DOI:10.1101/2024.02.09.579741
PMID:38659873
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11042203/
Abstract

In Lepidoptera (butterflies and moths), the genomic region around the gene is a 'hotspot' locus, repeatedly used to generate intraspecific melanic wing color polymorphisms across 100-million-years of evolution. However, the identity of the effector gene regulating melanic wing color within this locus remains unknown. Here, we show that none of the four candidate protein-coding genes within this locus, including , serve as major effectors. Instead, a micro-RNA (miRNA), , serves as the major effector across three deeply diverged lineages of butterflies, and its function is conserved in . In Lepidoptera, is derived from a gigantic long non-coding RNA, , and it functions by directly repressing multiple pigmentation genes. We show that a miRNA can drive repeated instances of adaptive evolution in animals.

摘要

在鳞翅目昆虫(蝴蝶和蛾类)中,基因周围的基因组区域是一个“热点”位点,在长达1亿年的进化过程中,该位点被反复用于产生种内黑色翅膀颜色多态性。然而,该位点内调控黑色翅膀颜色的效应基因的身份仍然未知。在这里,我们表明该位点内的四个候选蛋白质编码基因,包括 ,都不是主要效应因子。相反,一种微小RNA(miRNA), 在三个深度分化的蝴蝶谱系中作为主要效应因子,并且其功能在 中是保守的。在鳞翅目中, 源自一个巨大的长链非编码RNA, ,它通过直接抑制多个色素沉着基因发挥作用。我们表明一种miRNA可以推动动物适应性进化的重复实例。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4206/11042203/56a617b52baa/nihpp-2024.02.09.579741v2-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4206/11042203/279cf5443f2b/nihpp-2024.02.09.579741v2-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4206/11042203/ce29f625b6ce/nihpp-2024.02.09.579741v2-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4206/11042203/9ba6fd3d8bca/nihpp-2024.02.09.579741v2-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4206/11042203/56a617b52baa/nihpp-2024.02.09.579741v2-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4206/11042203/279cf5443f2b/nihpp-2024.02.09.579741v2-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4206/11042203/ce29f625b6ce/nihpp-2024.02.09.579741v2-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4206/11042203/9ba6fd3d8bca/nihpp-2024.02.09.579741v2-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4206/11042203/56a617b52baa/nihpp-2024.02.09.579741v2-f0004.jpg

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本文引用的文献

1
The lncRNA regulates seasonal color patterns in buckeye butterflies.长非编码 RNA 调控美洲眼蝶的季节性色彩模式。
Proc Natl Acad Sci U S A. 2024 Oct 8;121(41):e2403426121. doi: 10.1073/pnas.2403426121. Epub 2024 Oct 1.
2
A long noncoding RNA at the locus controls adaptive coloration in butterflies.一个位于 位置的长非编码 RNA 控制蝴蝶的适应性颜色。
Proc Natl Acad Sci U S A. 2024 Sep 3;121(36):e2403326121. doi: 10.1073/pnas.2403326121. Epub 2024 Aug 30.
3
A global phylogeny of butterflies reveals their evolutionary history, ancestral hosts and biogeographic origins.
蝴蝶的全球系统发育揭示了它们的进化历史、祖先宿主和生物地理起源。
Nat Ecol Evol. 2023 Jun;7(6):903-913. doi: 10.1038/s41559-023-02041-9. Epub 2023 May 15.
4
Taxon-specific, phased siRNAs underlie a speciation locus in monkeyflowers.分类特异的、分相的 siRNA 是猴面花物种形成位点的基础。
Science. 2023 Feb 10;379(6632):576-582. doi: 10.1126/science.adf1323. Epub 2023 Feb 9.
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The evolution and diversification of oakleaf butterflies.栎树蛱蝶的演化和多样化。
Cell. 2022 Aug 18;185(17):3138-3152.e20. doi: 10.1016/j.cell.2022.06.042. Epub 2022 Aug 3.
6
Association mapping of colour variation in a butterfly provides evidence that a supergene locks together a cluster of adaptive loci.蝴蝶颜色变异的关联图谱提供了证据,证明一个超级基因将一组适应性基因座锁定在一起。
Philos Trans R Soc Lond B Biol Sci. 2022 Aug;377(1856):20210193. doi: 10.1098/rstb.2021.0193. Epub 2022 Jun 13.
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A transcriptomic atlas underlying developmental plasticity of seasonal forms of Bicyclus anynana butterflies.一种揭示鞍带蛱蝶季节性形态发育可塑性的转录组图谱。
Mol Biol Evol. 2022 Jun 9;39(6). doi: 10.1093/molbev/msac126.
8
A large deletion at the cortex locus eliminates butterfly wing patterning.大片段缺失可消除蝶翅的斑纹模式。
G3 (Bethesda). 2022 Apr 4;12(4). doi: 10.1093/g3journal/jkac021.
9
-regulatory switches establish scale colour identity and pattern diversity in .调控开关在......中建立了规模颜色特征和图案多样性。
Elife. 2021 Jul 19;10:e68549. doi: 10.7554/eLife.68549.
10
Large-Scale Annotation and Evolution Analysis of MiRNA in Insects.昆虫中 miRNA 的大规模注释和进化分析。
Genome Biol Evol. 2021 May 7;13(5). doi: 10.1093/gbe/evab083.