Kumar Surender, Singh Anupama, Bist Chander Mohan Singh, Sharma Munish
Department of Biotechnology, College of Horticulture, Dr. Y. S. Parmar University of Horticulture and Forestry, Nauni, Solan-173230, Himachal Pradesh, India.
Indian Council of Agricultural Research (ICAR)-Central Potato Research Institute, Shimla-171001, Himachal Pradesh, India.
Brief Funct Genomics. 2024 Sep 27;23(5):607-623. doi: 10.1093/bfgp/elae017.
Genetic variability is essential for the development of new crop varieties with economically beneficial traits. The traits can be inherited from wild relatives or induced through mutagenesis. Novel genetic elements can then be identified and new gene functions can be predicted. In this study, forward and reverse genetics approaches were described, in addition to their applications in modern crop improvement programs and functional genomics. By using heritable phenotypes and linked genetic markers, forward genetics searches for genes by using traditional genetic mapping and allele frequency estimation. Despite recent advances in sequencing technology, omics and computation, genetic redundancy remains a major challenge in forward genetics. By analyzing close-related genes, we will be able to dissect their functional redundancy and predict possible traits and gene activity patterns. In addition to these predictions, sophisticated reverse gene editing tools can be used to verify them, including TILLING, targeted insertional mutagenesis, gene silencing, gene targeting and genome editing. By using gene knock-down, knock-up and knock-out strategies, these tools are able to detect genetic changes in cells. In addition, epigenome analysis and editing enable the development of novel traits in existing crop cultivars without affecting their genetic makeup by increasing epiallelic variants. Our understanding of gene functions and molecular dynamics of various biological phenomena has been revised by all of these findings. The study also identifies novel genetic targets in crop species to improve yields and stress tolerances through conventional and non-conventional methods. In this article, genetic techniques and functional genomics are specifically discussed and assessed for their potential in crop improvement.
遗传变异性对于培育具有经济有益性状的新作物品种至关重要。这些性状可以从野生近缘种遗传而来,也可以通过诱变诱导产生。然后可以鉴定新的遗传元件,并预测新的基因功能。在本研究中,除了正向和反向遗传学方法在现代作物改良计划和功能基因组学中的应用外,还对其进行了描述。通过使用可遗传的表型和连锁遗传标记,正向遗传学利用传统的遗传图谱绘制和等位基因频率估计来寻找基因。尽管测序技术、组学和计算技术最近取得了进展,但基因冗余仍然是正向遗传学中的一个主要挑战。通过分析密切相关的基因,我们将能够剖析它们的功能冗余,并预测可能的性状和基因活性模式。除了这些预测之外,还可以使用复杂的反向基因编辑工具来验证它们,包括定向诱导基因组局部突变(TILLING)、靶向插入诱变、基因沉默、基因靶向和基因组编辑。通过使用基因敲低、敲高和敲除策略,这些工具能够检测细胞中的遗传变化。此外,表观基因组分析和编辑能够通过增加表观等位基因变异,在不影响现有作物品种遗传组成的情况下开发新性状。所有这些发现都修正了我们对基因功能和各种生物现象分子动力学的理解。该研究还确定了作物物种中的新遗传靶点,以通过传统和非传统方法提高产量和抗逆性。在本文中,专门讨论和评估了遗传技术和功能基因组学在作物改良中的潜力。