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核糖体亚基耗竭和 p53-MDM4 轴的激活主导了 MLL 重排癌细胞对 WDR5 WIN 位点抑制的反应。

Ribosome subunit attrition and activation of the p53-MDM4 axis dominate the response of MLL-rearranged cancer cells to WDR5 WIN site inhibition.

机构信息

Department of Cell and Developmental Biology, Vanderbilt University School of Medicine, Nashville, United States.

Department of Biostatistics, Vanderbilt University Medical Center, Nashville, United States.

出版信息

Elife. 2024 Apr 29;12:RP90683. doi: 10.7554/eLife.90683.

Abstract

The chromatin-associated protein WD Repeat Domain 5 (WDR5) is a promising target for cancer drug discovery, with most efforts blocking an arginine-binding cavity on the protein called the 'WIN' site that tethers WDR5 to chromatin. WIN site inhibitors (WINi) are active against multiple cancer cell types in vitro, the most notable of which are those derived from MLL-rearranged (MLLr) leukemias. Peptidomimetic WINi were originally proposed to inhibit MLLr cells via dysregulation of genes connected to hematopoietic stem cell expansion. Our discovery and interrogation of small-molecule WINi, however, revealed that they act in MLLr cell lines to suppress ribosome protein gene (RPG) transcription, induce nucleolar stress, and activate p53. Because there is no precedent for an anticancer strategy that specifically targets RPG expression, we took an integrated multi-omics approach to further interrogate the mechanism of action of WINi in human MLLr cancer cells. We show that WINi induce depletion of the stock of ribosomes, accompanied by a broad yet modest translational choke and changes in alternative mRNA splicing that inactivate the p53 antagonist MDM4. We also show that WINi are synergistic with agents including venetoclax and BET-bromodomain inhibitors. Together, these studies reinforce the concept that WINi are a novel type of ribosome-directed anticancer therapy and provide a resource to support their clinical implementation in MLLr leukemias and other malignancies.

摘要

染色质相关蛋白 WD 重复结构域 5(WDR5)是癌症药物发现的一个有前途的靶点,大多数研究都集中在阻断该蛋白上一个称为“WIN”位点的精氨酸结合腔,该位点将 WDR5 与染色质连接。WIN 位点抑制剂(WINi)在体外对多种癌细胞类型均具有活性,其中最显著的是那些源于 MLL 重排(MLLr)白血病的抑制剂。最初提出肽模拟 WINi 通过失调与造血干细胞扩增相关的基因来抑制 MLLr 细胞。然而,我们对小分子 WINi 的发现和研究表明,它们在 MLLr 细胞系中通过抑制核糖体蛋白基因(RPG)转录、诱导核仁应激和激活 p53 来发挥作用。由于没有专门针对 RPG 表达的抗癌策略的先例,我们采用了综合的多组学方法进一步研究 WINi 在人类 MLLr 癌细胞中的作用机制。我们表明,WINi 诱导核糖体库存耗竭,同时伴有广泛但适度的翻译阻滞和改变选择性 mRNA 剪接,从而使 p53 拮抗剂 MDM4 失活。我们还表明,WINi 与 venetoclax 和 BET 溴结构域抑制剂等药物具有协同作用。总之,这些研究强化了 WINi 是一种新型的核糖体导向抗癌疗法的概念,并为支持它们在 MLLr 白血病和其他恶性肿瘤中的临床应用提供了资源。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0b60/11057873/4ac00e14347a/elife-90683-fig1.jpg

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