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比较新型蛋白质组学表达谱在雄性和雌性 C57BL6 小鼠中的辐射暴露情况。

Comparison of Novel Proteomic Expression Profiles for Radiation Exposure in Male and Female C57BL6 Mice.

机构信息

Radiation Oncology Branch, National Cancer Institute, Bethesda, Maryland.

Computational Genomics and Bioinformatics Branch, Center for Biomedical Informatics & Information Technology, National Cancer Institute, National Institute of Health, Rockville, Maryland.

出版信息

Radiat Res. 2024 Jun 1;201(6):558-566. doi: 10.1667/RADE-23-00180.1.

Abstract

There is a need for point-of-care diagnostics for future mass casualty events involving radiation exposure. The development of radiation exposure and dose prediction algorithms for biodosimetry is needed for screening of large populations during these scenarios, and exploration of the potential effects which sex, age, genetic heterogeneity, and physiological comorbidities may have on the utility of biodosimetry diagnostics is needed. In the current study, proteomic profiling was used to examine sex-specific differences in age-matched C57BL6 mice on the blood proteome after radiation exposure, and the usefulness of development and application of biodosimetry algorithms using both male and female samples. Male and female mice between 9-11 weeks of age received a dose of total-body irradiation (TBI) of either 2, 4 or 8 Gy and plasma was collected at days 1, 3 and 7 postirradiation. Plasma was then screened using the SomaScan v4.1 assay for ∼7,000 protein analytes. A subset panel of protein biomarkers demonstrated significant (FDR < 0.05 and |logFC| > 0.2) changes in expression after radiation exposure. All proteins were used for feature selection to build predictive models of radiation exposure using different sample and sex-specific cohorts. Both binary (prediction of any radiation exposure) and multidose (prediction of specific radiation dose) model series were developed using either female and male samples combined or only female or only male samples. The binary series (models 1, 2 and 3) and multidose series (models 4, 5 and 6) included female/male combined, female only and male only respectively. Detectable values were obtained for all ∼7,000 proteins included in the SomaScan assay for all samples. Each model algorithm built using a unique sample cohort was validated with a training set of samples and tested with a separate new sample series. Overall predictive accuracies in the binary model series was ∼100% at the model training level, and when tested with fresh samples, 97.9% for model 1 (female and male) and 100% for model 2 (female only) and model 3 (male only). When sex-specific models 2 and 3 were tested with the opposite sex, the overall predictive accuracy rate dropped to 62.5% for model 2 and remained 100% for model 3. The overall predictive accuracy rate in the multidose model series was 100% for all models at the model training level and, when tested with fresh samples, 83.3%, 75% and 83.3% for Multidose models 4-6, respectively. When sex-specific model 5 (female only) and model 6 (male only) were tested with the opposite sex, the overall predictive accuracy rate dropped to 52.1% and 68.8%, respectively. These models represent novel predictive panels of radiation-responsive proteomic biomarkers and illustrate the utility and necessity of considering sex-specific differences in development of radiation biodosimetry prediction algorithms. As sex-specific differences were observed in this study, and as use of point-of-care radiation diagnostics in future mass casualty settings will necessarily include persons of both sexes, consideration of sex-specific variation is essential to ensure these diagnostic tools have practical utility in the field.

摘要

未来涉及辐射暴露的大规模伤亡事件需要即时诊断。为了在这些情况下对大量人群进行筛选,需要开发用于辐射生物剂量学的辐射暴露和剂量预测算法,并探索性别、年龄、遗传异质性和生理合并症可能对生物剂量学诊断的应用产生的潜在影响。在本研究中,使用蛋白质组学分析来检测年龄匹配的 C57BL6 小鼠在辐射暴露后的血液蛋白质组中的性别特异性差异,并开发和应用使用雄性和雌性样本的生物剂量学算法的有用性。9-11 周龄的雄性和雌性小鼠接受全身照射(TBI)剂量分别为 2、4 或 8 Gy,并在照射后第 1、3 和 7 天收集血浆。然后使用 SomaScan v4.1 测定法筛选血浆,以检测约 7000 种蛋白质分析物。亚群面板的蛋白质生物标志物在辐射暴露后表现出显著(FDR < 0.05 和 |logFC| > 0.2)的表达变化。所有蛋白质都用于特征选择,以使用不同的样本和性别特异性队列构建辐射暴露的预测模型。使用雌性和雄性样本的组合或仅雌性或仅雄性样本,分别开发了二进制(预测任何辐射暴露)和多剂量(预测特定辐射剂量)模型系列。二进制系列(模型 1、2 和 3)和多剂量系列(模型 4、5 和 6)分别包括雌性/雄性组合、雌性专用和雄性专用。SomaScan 测定法中包含的所有约 7000 种蛋白质都可以为所有样本获得可检测值。使用独特的样本队列构建的每个模型算法都使用训练集样本进行验证,并使用新的独立样本系列进行测试。在二进制模型系列中,整体预测准确率在模型训练水平上约为 100%,当用新鲜样本进行测试时,模型 1(雌性和雄性)的整体预测准确率为 97.9%,模型 2(雌性专用)和模型 3(雄性专用)为 100%。当对特定于性别的模型 2 和 3 进行异性测试时,整体预测准确率下降到模型 2 的 62.5%,模型 3 的整体预测准确率仍为 100%。多剂量模型系列的整体预测准确率在模型训练水平上为 100%,当用新鲜样本进行测试时,多剂量模型 4-6 的整体预测准确率分别为 83.3%、75%和 83.3%。当对特定于性别的模型 5(雌性专用)和模型 6(雄性专用)进行异性测试时,整体预测准确率分别下降到 52.1%和 68.8%。这些模型代表了辐射反应性蛋白质生物标志物的新型预测面板,并说明了在开发辐射生物剂量学预测算法时考虑性别特异性差异的实用性和必要性。由于在本研究中观察到性别特异性差异,并且未来大规模伤亡事件中使用即时护理辐射诊断必然包括男女双方,因此考虑性别特异性变化对于确保这些诊断工具在该领域具有实际实用性至关重要。

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本文引用的文献

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Effect of Age and Sex on Gene Expression-Based Radiation Biodosimetry Using Mouse Peripheral Blood.
Cytogenet Genome Res. 2023;163(3-4):197-209. doi: 10.1159/000530172. Epub 2023 Mar 16.
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Metabolites. 2020 Aug 11;10(8):328. doi: 10.3390/metabo10080328.
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Comparison of Proteomic Biodosimetry Biomarkers Across Five Different Murine Strains.
Radiat Res. 2019 Dec;192(6):640-648. doi: 10.1667/RR15442.1. Epub 2019 Oct 16.
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Radiosensitivity: Gender and Order of Administration of G-CSF, An Experimental Study in Mice.
Radiat Res. 2019 Apr;191(4):335-341. doi: 10.1667/RR15038.1. Epub 2019 Feb 7.
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Effect of Sex on Biomarker Response in a Mouse Model of the Hematopoietic Acute Radiation Syndrome.
Health Phys. 2019 Apr;116(4):484-502. doi: 10.1097/HP.0000000000000961.

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