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2020 年中国山东省一起罕见的水源性 暴发疫情:流行病学调查、基因组见解和毒力特征。

A rare waterborne outbreak of in Shandong province, China, 2020: epidemiologic survey, genomic insights, and virulence characteristics.

机构信息

Shandong Center for Disease Control and Prevention, Jinan, People's Republic of China.

Shandong Institute for Food and Drug Control, Jinan, People's Republic of China.

出版信息

Emerg Microbes Infect. 2024 Dec;13(1):2348498. doi: 10.1080/22221751.2024.2348498. Epub 2024 Jun 3.

Abstract

, a Gram-positive conditional pathogen of group species, is capable of causing foodborne and waterborne illnesses, leading to intestinal diseases in humans characterized by diarrhoea and vomiting. However, documented cases of infection outbreaks are rare in the world, and the genomic background of outbreak strains is seldom characterized. This study retrospectively analyzed strains obtained from an outbreak in schools, as well as from water systems in peri-urban areas, China, in 2020. In total, 28 group isolates were retrieved, comprising 6 from stool samples and 22 from water samples. Epidemiological and phylogenetic investigations indicated that the isolate from drinking water as the causative agent of the outbreak. The genomic comparison revealed a high degree of consistency among 8 outbreak-related strains in terms of antimicrobial resistance gene profiles, virulence gene profiles, genomic content, and multilocus sequence typing (MLST). The strains related to the outbreak show highly similar genomic ring diagrams and close phylogenetic relationships. Additionally, this study shed light on the pathogenic potential and complexity of group through its diversity in virulence genes and mice infection model. The findings highlight the usefulness of genomes in understanding genetic diversity within specific environments and in tracing the source of pathogens during outbreak situations, thereby enabling targeted infection control interventions.

摘要

迟缓爱德华氏菌是 群物种中的一种革兰氏阳性条件致病菌,能够引起食源性和水源性疾病,导致人类肠道疾病,表现为腹泻和呕吐。然而,世界范围内有记录的迟缓爱德华氏菌感染爆发病例很少,爆发菌株的基因组背景也很少被描述。本研究回顾性分析了 2020 年中国学校和城郊地区水系统中爆发疫情的菌株。总共回收了 28 株 群分离株,其中 6 株来自粪便样本,22 株来自水样。流行病学和系统发育学调查表明,饮用水中的 分离株是此次疫情的病原体。基因组比较显示,8 株与疫情相关的菌株在耐药基因谱、毒力基因谱、基因组含量和多位点序列分型(MLST)方面具有高度一致性。与疫情相关的菌株具有高度相似的基因组环状图谱和密切的系统发育关系。此外,本研究还通过其在毒力基因和小鼠感染模型中的多样性,揭示了 群的致病潜力和复杂性。这些发现强调了 基因组在理解特定环境内遗传多样性以及在疫情爆发期间追踪病原体来源方面的作用,从而能够进行有针对性的感染控制干预。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f27b/11149578/f97a46751318/TEMI_A_2348498_F0001_OC.jpg

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