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具有核心臂长为三整圈的三点星脱氧核糖核酸瓦片,用于二维阿基米德平铺和超越。

Three-Point-Star Deoxyribonucleic Acid Tiles with the Core Arm Length at Three Half-Turns for Two-Dimensional Archimedean Tilings and Beyond.

机构信息

State Key Laboratory of Coordination Chemistry, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China.

出版信息

Langmuir. 2024 May 14;40(19):10326-10333. doi: 10.1021/acs.langmuir.4c00985. Epub 2024 Apr 30.

Abstract

2D Archimedean tiling and complex tessellation patterns assembled from soft materials including modular DNA tiles have attracted great interest because of their specific structures and potential applications in nanofabrication, nanoelectronics, nanophotonics, biomedical sensing, drug delivery, therapeutics, etc. Traditional three- and four-point-star DNA tiles with the core arm length at two half-turns (specified as three- and four-point-star-E previously and abbreviated as 3PSE and 4PSE tiles here) have been applied to assemble intricate tessellations through tuning the size of inserted T ( = 1-7, T is thymine) loops on helper strands at the tile center. Following our recent findings using a new type of four-point-star tiles with the core arm length at three half-turns (specified as four-point-star-O previously and abbreviated as 4PSO tiles here) to assemble DNA tubes and flat 2D arrays, we report here the cross-hybridization weaving architectures at the tile center to construct three new 3PSO tiles with circular DNA oligonucleotides of 96-nt (nucleotides) serving as the scaffolds, further the monotonous and combinatory E- and O-tilings on one type of 3PSO tiles to create 2D Archimedean tiling patterns (6.6.6) and (4.8.8), and finally, the combination of 3PSO with 4PSO as well as 2PSO tiles to tile into complex tessellation patterns. The easy realization of regular and intricate DNA tessellations with 2-4PSO tiles not only richens the fundamental DNA modules and complex DNA nanostructures in types but also broadens the potential application scopes of DNA nanostructures in nanofabrication, DNA computing, biomedicine, etc.

摘要

二维阿基米德平铺和由软物质组装的复杂镶嵌图案,包括模块化 DNA 瓦片,由于其特殊结构和在纳米制造、纳米电子学、纳米光子学、生物医学传感、药物输送、治疗等方面的潜在应用而引起了极大的兴趣。传统的具有两个半圈核心臂长的三点和四点星 DNA 瓦片(以前称为三点和四点星-E,这里缩写为 3PSE 和 4PSE 瓦片)已被应用于通过调整辅助链上中心 tile 处插入 T(=1-7,T 是胸腺嘧啶)环的大小来组装复杂的镶嵌图案。在我们最近使用具有三个半圈核心臂长的新型四点星瓦片(以前称为四点星-O,这里缩写为 4PSO 瓦片)组装 DNA 管和平铺二维阵列的发现之后,我们在这里报告了 tile 中心的交叉杂交编织结构,以构建三个新的 3PSO 瓦片,使用 96-nt(核苷酸)的圆形 DNA 寡核苷酸作为支架,进一步使用一种 3PSO 瓦片上单调和组合的 E-和 O-瓦片来创建二维阿基米德平铺图案(6.6.6)和(4.8.8),最后,3PSO 与 4PSO 以及 2PSO 瓦片的组合可用于平铺复杂的镶嵌图案。使用 2-4PSO 瓦片实现规则和复杂的 DNA 镶嵌的简便性不仅丰富了基本的 DNA 模块和复杂的 DNA 纳米结构的类型,而且拓宽了 DNA 纳米结构在纳米制造、DNA 计算、生物医学等方面的潜在应用范围。

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