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新种,一种具有抗菌活性的耐盐放线菌。

sp. nov., a halotolerant actinobacterium with antimicrobial activity.

作者信息

Su Qingyang, Liu Yuwei, Xia Tingting, Wei Shuanglong, Cui Caixia, Zhang Zhao, Liu Xudong, Nie Guoxing, Ming Hong

机构信息

Synthetic Biology Engineering Lab of Henan Province, College of Life Sciences and Technology, Xinxiang Medical University, Xinxiang, 453003, PR China.

College of Fisheries, Henan Normal University, Xinxiang, 453007, PR China.

出版信息

Int J Syst Evol Microbiol. 2024 May;74(5). doi: 10.1099/ijsem.0.006362.

Abstract

A novel Gram-staining-positive actinobacterium with antimicrobial activity, designated CFH 90308, was isolated from the sediment of a salt lake in Yuncheng, Shanxi, south-western China. The isolate exhibited the highest 16S rRNA gene sequence similarities to G72, NBRC 15708 and S3-E (98.5, 98.4 and 98.2 %, respectively), and formed a separate clade with S3-E in phylogenetic trees. The strain grew at 15-40 ºC, pH 6.0-8.0 and could tolerate NaCl up to a concentration of 15 % (w/v). The whole genome of strain CFH 90308 consisted of 4.33 Mbp and the DNA G+C content was 69.6 mol%. The acyl type of the peptidoglycan was glycolyl and the whole-cell sugars were galactose and mannose. The cell-wall peptidoglycan mainly contained alanine, glycine and lysine. The menaquinones of strain CFH 90308 were MK-12, MK-13 and MK-11. Strain CFH 90308 contained anteiso-C, anteiso-C, iso-C and iso-C as the predominant fatty acids. The average nucleotide identity (ANI) and digital DNA-DNA hybridization (dDDH) values between CFH 90308 and the other species of the genus were found to be low (ANIb <81.3 %, dDDH <25.6 %). The secondary metabolite produced by strain CFH 90308 showed antibacterial activities against , , and methicillin-resistant . Based on genotypic, phenotypic and chemotaxonomic results, the isolate is considered to represent a novel species of the genus , for which the name sp. nov is proposed. The type strain is CFH 90308 (=DSM 105964=KCTC 49052).

摘要

从中国西南部山西省运城市一个盐湖的沉积物中分离出一株具有抗菌活性的新型革兰氏染色阳性放线菌,命名为CFH 90308。该分离株与G72、NBRC 15708和S3-E的16S rRNA基因序列相似性最高(分别为98.5%、98.4%和98.2%),并在系统发育树中与S3-E形成一个单独的分支。该菌株在15-40ºC、pH 6.0-8.0条件下生长,可耐受高达15%(w/v)的NaCl。菌株CFH 90308的全基因组由4.33 Mbp组成,DNA G+C含量为69.6 mol%。肽聚糖的酰基类型为糖基,全细胞糖为半乳糖和甘露糖。细胞壁肽聚糖主要含有丙氨酸、甘氨酸和赖氨酸。菌株CFH 90308的甲基萘醌为MK-12、MK-13和MK-11。菌株CFH 90308以anteiso-C、anteiso-C、iso-C和iso-C为主要脂肪酸。发现CFH 90308与该属其他物种之间的平均核苷酸同一性(ANI)和数字DNA-DNA杂交(dDDH)值较低(ANIb<81.3%,dDDH<25.6%)。菌株CFH 90308产生的次生代谢产物对[具体细菌名称1]、[具体细菌名称2]、[具体细菌名称3]和耐甲氧西林[具体细菌名称4]具有抗菌活性。基于基因型、表型和化学分类学结果,该分离株被认为代表该属的一个新物种,为此提出新名称[新物种名称] sp. nov。模式菌株为CFH 90308(=DSM 105964=KCTC 49052)。

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