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外周表观基因组可预测取决于发育阶段的白质体积:一项ECHO研究。

The peripheral epigenome predicts white matter volume contingent on developmental stage: An ECHO study.

作者信息

Spencer Sophie, Harker Samantha A, Barry Fatoumata, Beauchemin Jennifer, Braden B Blair, Burton Phoebe, D'sa Viren, Koinis-Mitchell Daphne, Mennenga Sarah E, Deoni Sean C L, Lewis Candace R

机构信息

Arizona State University.

Rhode Island Hospital, Brown University.

出版信息

Res Sq. 2024 Apr 19:rs.3.rs-4139933. doi: 10.21203/rs.3.rs-4139933/v1.

DOI:10.21203/rs.3.rs-4139933/v1
PMID:38699338
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11065062/
Abstract

Epigenetic processes, including DNA methylation, are emerging as key areas of interest for their potential roles as biomarkers and contributors to the risk of neurodevelopmental, psychiatric, and other brain-based disorders. Despite this growing focus, there remains a notable gap in our understanding of how DNA methylation correlates with individual variations in brain function and structure. Additionally, the dynamics of these relationships during developmental periods, which are critical windows during which many disorders first appear, are still largely unexplored. The current study extends the field by examining if peripheral DNA methylation of myelination-related genes predicts white matter volume in a healthy pediatric population [N = 250; females = 113; age range 2 months-14 years; = 5.14, = 3.60]. We assessed if DNA methylation of 17 myelin-related genes predict white matter volume and if age moderates these relationships. Results highlight low variability in myelin-related epigenetic variance at birth, which rapidly increases non-linearly with age, and that DNA methylation, measured at both the level of a CpG site or gene, is highly predictive of white matter volume, in early childhood but not late childhood. These novel findings propel the field forward by establishing that DNA methylation of myelin-related genes from a peripheral tissue is a predictive marker of white matter volume in children and is influenced by developmental stage. The research underscores the significance of peripheral epigenetic patterns as a proxy for investigating the effects of environmental factors, behaviors, and disorders associated with white matter.

摘要

表观遗传过程,包括DNA甲基化,正成为备受关注的关键领域,因为它们作为生物标志物以及导致神经发育、精神和其他脑部疾病风险的潜在作用。尽管关注度不断提高,但我们对DNA甲基化如何与脑功能和结构的个体差异相关联的理解仍存在显著差距。此外,在发育阶段这些关系的动态变化,而发育阶段是许多疾病首次出现的关键时期,目前仍 largely 未被探索。本研究通过检查髓鞘形成相关基因的外周DNA甲基化是否能预测健康儿童群体的白质体积 [N = 250;女性 = 113;年龄范围2个月至14岁;= 5.14,= 3.60] 来扩展该领域。我们评估了17个髓鞘形成相关基因的DNA甲基化是否能预测白质体积,以及年龄是否会调节这些关系。结果表明,出生时髓鞘形成相关表观遗传变异的变异性较低,随年龄迅速非线性增加,并且在儿童早期而非晚期,无论是在CpG位点还是基因水平测量的DNA甲基化对白质体积都具有高度预测性。这些新发现通过确定外周组织中髓鞘形成相关基因的DNA甲基化是儿童白质体积的预测标志物且受发育阶段影响,推动了该领域的发展。该研究强调了外周表观遗传模式作为研究与白质相关的环境因素、行为和疾病影响的代理指标的重要性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/075c/11065062/57d2fdc88a53/nihpp-rs4139933v1-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/075c/11065062/16c9947324ed/nihpp-rs4139933v1-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/075c/11065062/c55ec75bd85c/nihpp-rs4139933v1-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/075c/11065062/57d2fdc88a53/nihpp-rs4139933v1-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/075c/11065062/16c9947324ed/nihpp-rs4139933v1-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/075c/11065062/c55ec75bd85c/nihpp-rs4139933v1-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/075c/11065062/57d2fdc88a53/nihpp-rs4139933v1-f0003.jpg

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本文引用的文献

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A systematic review of neuroimaging epigenetic research: calling for an increased focus on development.神经影像学表观遗传学研究的系统评价:呼吁更加关注发育。
Mol Psychiatry. 2023 Jul;28(7):2839-2847. doi: 10.1038/s41380-023-02067-2. Epub 2023 Apr 25.
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Cross-tissue correlations of genome-wide DNA methylation in Japanese live human brain and blood, saliva, and buccal epithelial tissues.日本活人脑及血液、唾液和口腔上皮组织中全基因组 DNA 甲基化的跨组织相关性。
Transl Psychiatry. 2023 Feb 27;13(1):72. doi: 10.1038/s41398-023-02370-0.
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A correlation map of genome-wide DNA methylation patterns between paired human brain and buccal samples.
人类大脑和口腔样本全基因组 DNA 甲基化模式的关联图谱。
Clin Epigenetics. 2022 Nov 1;14(1):139. doi: 10.1186/s13148-022-01357-w.
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Demographic reporting across a decade of neuroimaging: a systematic review.十年来神经影像学的人口统计学报告:系统评价。
Brain Imaging Behav. 2022 Dec;16(6):2785-2796. doi: 10.1007/s11682-022-00724-8. Epub 2022 Sep 17.
5
Epigenetic differences in inflammation genes of monozygotic twins are related to parent-child emotional availability and health.同卵双胞胎炎症基因的表观遗传差异与亲子情感联结及健康状况有关。
Brain Behav Immun Health. 2020 May 22;5:100084. doi: 10.1016/j.bbih.2020.100084. eCollection 2020 May.
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Sexual assault and white matter hyperintensities among midlife women.中年女性的性侵犯与脑白质高信号
Brain Imaging Behav. 2022 Apr;16(2):773-780. doi: 10.1007/s11682-021-00536-2. Epub 2021 Sep 23.
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Disentangling age-dependent DNA methylation: deterministic, stochastic, and nonlinear.解析年龄相关的 DNA 甲基化:确定性、随机性和非线性。
Sci Rep. 2021 Apr 28;11(1):9201. doi: 10.1038/s41598-021-88504-0.
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Correction to: White matter and neurological disorders.对《白质与神经疾病》的勘误
Arch Pharm Res. 2021 Mar;44(3):322. doi: 10.1007/s12272-020-01303-5.
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