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亲缘相近非结核分枝杆菌的基因组和表型特征分析。

Genomic and phenotypic characterization of closest-related non-tuberculous mycobacteria.

机构信息

Institut Pasteur, Université Paris Cité, Unit for Integrated Mycobacterial Pathogenomics, CNRS UMR 6047, Paris, France.

Institut Pasteur, Université Paris Cité, Plate-forme Technologique Biomics, Paris, France.

出版信息

Microbiol Spectr. 2024 Jun 4;12(6):e0412623. doi: 10.1128/spectrum.04126-23. Epub 2024 May 3.


DOI:10.1128/spectrum.04126-23
PMID:38700329
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11237670/
Abstract

Four species of non-tuberculous mycobacteria (NTM) rated as biosafety level 1 or 2 (BSL-1/BSL-2) organisms and showing higher genomic similarity with () than previous comparator species and were subjected to genomic and phenotypic characterization. These species named , , and might represent "missing links" between low-virulent mycobacterial opportunists and the highly virulent obligate pathogen . We confirmed that is the closest NTM species to currently known and found that it has an optimal growth temperature of 32°C-35°C and not 37°C. showed resistance to rifampicin, isoniazid, and ethambutol, whereas and showed resistance to isoniazid and ethambutol. was sensitive to all three first-line TB drugs, and all four species were sensitive to bedaquiline, a third-generation anti-TB drug. Our results suggest these four NTM may be useful models for the identification and study of new anti-TB molecules, facilitated by their culture under non-BSL-3 conditions as compared to was the most virulent of the four species in cellular and mouse infection models. also multiplied in THP-1 cells at 35°C but was growth impaired at 37°C. Genomic comparisons showed that the locus, essential for the secretion of ESX-1 proteins in , was present only in , which was able to secrete ESAT-6 and CFP-10, whereas secretion of these antigens varied in the other species, making the four species interesting examples for studying ESX-1 secretion mechanisms.IMPORTANCEIn this work, we investigated recently identified opportunistic mycobacterial pathogens that are genomically more closely related to () than previously used comparator species and . We confirmed that is the currently closest known species to the tubercle bacilli, represented by and strains. Surprisingly, the reference strain of (DSM 45176), which was purchased as a biosafety level 1 (BSL-1)-rated organism, was the most virulent of the four species in the tested cellular and mouse infection models, suggesting that a BSL-2 rating might be more appropriate for this strain than the current BSL-1 rating. Our work establishes the four NTM species as interesting study models to obtain new insights into the evolutionary mechanisms and phenotypic particularities of mycobacterial pathogens that likely have also impacted the evolution of the key pathogen .

摘要

四种非结核分枝杆菌(NTM)被评为生物安全水平 1 级或 2 级(BSL-1/BSL-2)生物,与先前的比较物种 和 相比,其基因组具有更高的相似性,因此进行了基因组和表型特征分析。这些被命名为 、 、 和 的物种可能代表了低毒分枝杆菌机会主义者与高毒专性病原体 之间的“缺失环节”。我们证实 是目前已知的与 最接近的 NTM 物种,并且发现其最佳生长温度为 32°C-35°C,而不是 37°C。 显示对利福平、异烟肼和乙胺丁醇的耐药性,而 和 则显示对异烟肼和乙胺丁醇的耐药性。 对三种一线抗结核药物均敏感,四种均对第三代抗结核药物贝达喹啉敏感。我们的结果表明,与 相比,这四种 NTM 可能是鉴定和研究新抗结核分子的有用模型,因为它们在非 BSL-3 条件下培养,而 是四种物种中在细胞和小鼠感染模型中最毒力的。 也在 35°C 下在 THP-1 细胞中繁殖,但在 37°C 下生长受到抑制。基因组比较表明, 在 中分泌 ESX-1 蛋白所必需的 基因座仅存在于 中, 能够分泌 ESAT-6 和 CFP-10,而这些抗原的分泌在其他物种中有所不同,这使得这四个物种成为研究 ESX-1 分泌机制的有趣例子。重要性 在这项工作中,我们研究了最近鉴定的机会性分枝杆菌病原体,它们与先前使用的比较物种 和 相比,与 ( )的基因组更为密切相关。我们证实 是目前已知的与结核分枝杆菌最接近的物种,代表菌株为 和 。令人惊讶的是,参考菌株 (DSM 45176)被购买为生物安全水平 1 级(BSL-1)级别的生物体,但在测试的细胞和小鼠感染模型中是四种物种中最毒力的,这表明对于该菌株,BSL-2 评级可能比当前的 BSL-1 评级更合适。我们的工作确立了这四个 NTM 物种作为有趣的研究模型,以深入了解分枝杆菌病原体的进化机制和表型特征,这些特征可能也影响了关键病原体 的进化。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/119d/11237670/862a6e66721a/spectrum.04126-23.f005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/119d/11237670/919244cabc68/spectrum.04126-23.f001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/119d/11237670/8a1c2cd567df/spectrum.04126-23.f002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/119d/11237670/98c59d11ec23/spectrum.04126-23.f003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/119d/11237670/0842d3193da5/spectrum.04126-23.f004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/119d/11237670/862a6e66721a/spectrum.04126-23.f005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/119d/11237670/919244cabc68/spectrum.04126-23.f001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/119d/11237670/8a1c2cd567df/spectrum.04126-23.f002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/119d/11237670/98c59d11ec23/spectrum.04126-23.f003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/119d/11237670/0842d3193da5/spectrum.04126-23.f004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/119d/11237670/862a6e66721a/spectrum.04126-23.f005.jpg

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[3]
The Gene and Regulatory Network Involved in Ethambutol Resistance in .

Microb Drug Resist. 2023-5

[4]
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JAC Antimicrob Resist. 2022-3-29

[5]
Characterization of embB mutations involved in ethambutol resistance in multi-drug resistant Mycobacterium tuberculosis isolates in Zambia.

Tuberculosis (Edinb). 2022-3

[6]
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[7]
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