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黑腹果蝇超氧化物歧化酶的计算机识别与表达分析

In silico identification and expression analysis of superoxide dismutases in Tenebrio molitor.

机构信息

Department of Biology, College of Natural Sciences, Soonchunhyang University, Asan City, 31538, Republic of Korea.

Korea Native Animal Resources Utilization Convergence Research Institute (KNAR), Soonchunhyang University, Asan, Chungnam, South Korea.

出版信息

Genes Genomics. 2024 Jul;46(7):733-742. doi: 10.1007/s13258-024-01518-6. Epub 2024 May 3.

Abstract

BACKGROUND

Insects encounter various environmental stresses, in response to which they generate reactive oxygen species (ROS). Superoxide dismutase (SOD) is an antioxidant metalloenzyme that scavenges superoxide radicals to prevent oxidative damage.

OBJECTIVE

To investigate expressions of SODs under oxidative stress in Tenebrio molitor.

METHODS

Here, we investigated the transcriptional expression of SODs by pesticide and heavy metals in Tenebrio moltior. First, we searched an RNA-Seq database for T. molitor SOD (TmSOD) genes and identified two SOD isoforms (TmSOD1-iso1 and iso2). We examined their activities under developmental stage, tissue-specific, and various types (pesticide and heavy metal) of oxidative stress by using qPCR.

RESULTS

Our results revealed two novel forms of TmSODs. These TmSODs had a copper/zinc superoxide dismutase domain, active site, Cu binding site, Zn binding site, E-class dimer interface, and P-class dimer interface. TmSODs (TmSOD1-iso1 and iso2) were expressed in diverse developmental phases and tissues. Pesticides and heavy metals caused an upregulation of these TmSODs.

CONCLUSION

Our findings suggest that the two TmSODs have different functions in T. molitor, providing insights into the detoxification ability of T. molitor.

摘要

背景

昆虫会遇到各种环境压力,作为应对,它们会产生活性氧(ROS)。超氧化物歧化酶(SOD)是一种抗氧化金属酶,可清除超氧自由基,防止氧化损伤。

目的

研究氧化应激下黄粉虫中 SOD 的表达情况。

方法

在这里,我们通过农药和重金属研究了黄粉虫中 SOD 的转录表达。首先,我们在 RNA-Seq 数据库中搜索了黄粉虫 SOD(TmSOD)基因,并鉴定了两种 SOD 同工酶(TmSOD1-iso1 和 iso2)。我们通过 qPCR 检查了它们在发育阶段、组织特异性和各种类型(农药和重金属)氧化应激下的活性。

结果

我们的结果揭示了两种新的 TmSOD 形式。这些 TmSOD 具有铜/锌超氧化物歧化酶结构域、活性位点、Cu 结合位点、Zn 结合位点、E 类二聚体界面和 P 类二聚体界面。TmSODs(TmSOD1-iso1 和 iso2)在不同的发育阶段和组织中表达。农药和重金属会导致这些 TmSOD 的上调。

结论

我们的发现表明,这两种 TmSOD 在黄粉虫中有不同的功能,为黄粉虫的解毒能力提供了深入了解。

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