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在大肠杆菌中,抗生素耐药性突变在不同环境下的适应性效应具有不可预测性。

Unpredictability of the Fitness Effects of Antimicrobial Resistance Mutations Across Environments in Escherichia coli.

机构信息

Department of Biology, Carleton University, Ottawa, ON K1S 5B6, Canada.

Department of Biology, University of Ottawa, Ottawa, ON K1N 6N5, Canada.

出版信息

Mol Biol Evol. 2024 May 3;41(5). doi: 10.1093/molbev/msae086.

Abstract

The evolution of antimicrobial resistance (AMR) in bacteria is a major public health concern, and antibiotic restriction is often implemented to reduce the spread of resistance. These measures rely on the existence of deleterious fitness effects (i.e. costs) imposed by AMR mutations during growth in the absence of antibiotics. According to this assumption, resistant strains will be outcompeted by susceptible strains that do not pay the cost during the period of restriction. The fitness effects of AMR mutations are generally studied in laboratory reference strains grown in standard growth environments; however, the genetic and environmental context can influence the magnitude and direction of a mutation's fitness effects. In this study, we measure how three sources of variation impact the fitness effects of Escherichia coli AMR mutations: the type of resistance mutation, the genetic background of the host, and the growth environment. We demonstrate that while AMR mutations are generally costly in antibiotic-free environments, their fitness effects vary widely and depend on complex interactions between the mutation, genetic background, and environment. We test the ability of the Rough Mount Fuji fitness landscape model to reproduce the empirical data in simulation. We identify model parameters that reasonably capture the variation in fitness effects due to genetic variation. However, the model fails to accommodate the observed variation when considering multiple growth environments. Overall, this study reveals a wealth of variation in the fitness effects of resistance mutations owing to genetic background and environmental conditions, which will ultimately impact their persistence in natural populations.

摘要

细菌对抗生素耐药性(AMR)的进化是一个主要的公共卫生关注点,抗生素限制通常被用来减少耐药性的传播。这些措施依赖于 AMR 突变在没有抗生素的情况下生长时所施加的有害适应度效应(即成本)的存在。根据这一假设,在限制期间不承担成本的敏感菌株将比具有耐药性的菌株更具竞争力。通常在标准生长环境中研究 AMR 突变的适应度效应在实验室参考菌株中进行;然而,遗传和环境背景会影响突变适应度效应的大小和方向。在这项研究中,我们测量了三种变异来源如何影响大肠杆菌 AMR 突变的适应度效应:耐药突变的类型、宿主的遗传背景和生长环境。我们证明,尽管 AMR 突变在无抗生素环境中通常是有代价的,但它们的适应度效应差异很大,取决于突变、遗传背景和环境之间的复杂相互作用。我们在模拟中测试了 Rough Mount Fuji 适应度景观模型再现经验数据的能力。我们确定了合理捕捉由于遗传变异导致的适应度效应变化的模型参数。然而,当考虑多个生长环境时,该模型无法适应观察到的变化。总的来说,这项研究揭示了由于遗传背景和环境条件的变化,耐药突变的适应度效应存在大量的变化,这将最终影响它们在自然种群中的持久性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b5b7/11110942/f590c5023411/msae086f1.jpg

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