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超级增强子诱导的LINC00862的泛癌分析及其作为宫颈癌和胃癌中SIRT1促进因子的验证

Pan-cancer analysis of super-enhancer-induced LINC00862 and validation as a SIRT1-promoting factor in cervical cancer and gastric cancer.

作者信息

Liu Shaojun, Wang Zhaohui, Hu Lei, Ye Chao, Zhang Xubin, Zhu Zhiqiang, Li Jiaqiu, Shen Qi

机构信息

Department of General Surgery, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei 230001, Anhui, China.

Department of Pathology, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei 230001, Anhui, China.

出版信息

Transl Oncol. 2024 Jul;45:101982. doi: 10.1016/j.tranon.2024.101982. Epub 2024 May 7.

Abstract

Immune checkpoints inhibitors are effective but it needs more precise biomarkers for patient selection. We explored the biological significance of LINC00862 in pan-cancer by bioinformatics. And we studied its regulatory mechanisms using chromatin immunoprecipitation and RNA immunoprecipitation assays etc. TCGA and single-cell sequencing data analysis indicated that LINC00862 was overexpressed in the majority of tumor and stromal cells, which was related with poor prognosis. LINC00862 expression was related with immune cell infiltration and immune checkpoints expression, and had a high predictive value for immunotherapy efficacy. Mechanistically, LINC00862 competitively bound to miR-29c-3p to unleash SIRT1's tumor-promoting function. SIRT1 inhibitor-EX527 were screened by virtual screening and verified by in vitro and vivo assays. Notably, acetyltransferase P300-mediated super-enhancer activity stimulated LINC00862 transcription. Collectively, LINC00862 could be a diagnostic and prognostic biomarker. LINC00862 could also be a predictive biomarker for immunotherapy efficacy. Super-enhancer activity is the driver for LINC00862 overexpression in cervical cancer and gastric cancer.

摘要

免疫检查点抑制剂是有效的,但需要更精确的生物标志物来进行患者选择。我们通过生物信息学探索了LINC00862在泛癌中的生物学意义。并且我们使用染色质免疫沉淀和RNA免疫沉淀分析等方法研究了其调控机制。TCGA和单细胞测序数据分析表明,LINC00862在大多数肿瘤细胞和基质细胞中过表达,这与预后不良有关。LINC00862的表达与免疫细胞浸润和免疫检查点表达相关,对免疫治疗疗效具有较高的预测价值。机制上,LINC00862竞争性结合miR-29c-3p以释放SIRT1的促肿瘤功能。通过虚拟筛选筛选出SIRT1抑制剂EX527,并通过体外和体内实验进行验证。值得注意的是,乙酰转移酶P300介导的超级增强子活性刺激了LINC00862的转录。总体而言,LINC00862可能是一种诊断和预后生物标志物。LINC00862也可能是免疫治疗疗效的预测生物标志物。超级增强子活性是宫颈癌和胃癌中LINC00862过表达的驱动因素。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bd68/11097084/e500cc661d3d/ga1.jpg

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