Jiang Yuqian, Lu Xin-Yu, Qin Ya-Li, Zhang Yan-Mei, Shao Zhu-Qing
School of Life Sciences, Nanjing University, Nanjing 210023, China.
Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing 210014, China.
Plants (Basel). 2024 May 5;13(9):1274. doi: 10.3390/plants13091274.
, commonly known as "greater yam", is a vital crop in tropical and subtropical regions of the world, yet it faces significant threats from anthracnose disease, mainly caused by . However, exploring disease resistance genes in this species has been challenging due to the difficulty of genetic mapping resulting from the loss of the flowering trait in many varieties. The receptor-like kinase (RLK) gene family represents essential immune receptors in plants. In this study, genomic analysis revealed 467 RLK genes in . The identified RLKs were distributed unevenly across chromosomes, likely due to tandem duplication events. However, a considerable number of ancient whole-genome or segmental duplications dating back over 100 million years contributed to the diversity of RLK genes. Phylogenetic analysis unveiled at least 356 ancient RLK lineages in the common ancestor of Dioscoreaceae, which differentially inherited and expanded to form the current RLK profiles of and its relatives. The analysis of cis-regulatory elements indicated the involvement of RLK genes in diverse stress responses. Transcriptome analysis identified RLKs that were up-regulated in response to infection, suggesting their potential role in resisting anthracnose disease. These findings provide novel insights into the evolution of RLK genes in and their potential contribution to disease resistance.
,通常被称为“大薯”,是世界热带和亚热带地区的一种重要作物,但它面临着由炭疽病引起的重大威胁,炭疽病主要由 引起。然而,由于许多品种失去开花性状导致遗传图谱绘制困难,在该物种中探索抗病基因一直具有挑战性。类受体激酶(RLK)基因家族是植物中重要的免疫受体。在本研究中,基因组分析揭示了 中有467个RLK基因。已鉴定的RLK基因在染色体上分布不均,这可能是由于串联重复事件。然而,大量可追溯到1亿多年前的古老全基因组或片段重复事件促成了RLK基因的多样性。系统发育分析揭示了薯蓣科共同祖先中至少356个古老的RLK谱系,这些谱系差异遗传并扩展形成了 及其近缘种当前的RLK图谱。顺式调控元件分析表明RLK基因参与多种应激反应。转录组分析确定了在感染 后上调的RLK基因,表明它们在抵抗炭疽病中的潜在作用。这些发现为 中RLK基因的进化及其对抗病性的潜在贡献提供了新的见解。