广谱 SARS-CoV-2 中和抗体亲和力成熟的结构基础。

Structural basis of broad SARS-CoV-2 cross-neutralization by affinity-matured public antibodies.

机构信息

Department of Microbiology, Tumor and Cell Biology, Karolinska Institutet, Stockholm, Sweden; Division of Medical Virology, Institute of Infectious Diseases and Molecular Medicine, University of Cape Town, Cape Town, South Africa.

Department of Microbiology, Tumor and Cell Biology, Karolinska Institutet, Stockholm, Sweden.

出版信息

Cell Rep Med. 2024 Jun 18;5(6):101577. doi: 10.1016/j.xcrm.2024.101577. Epub 2024 May 17.

Abstract

Descendants of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) Omicron variant now account for almost all SARS-CoV-2 infections. The Omicron variant and its sublineages have spike glycoproteins that are highly diverged from the pandemic founder and first-generation vaccine strain, resulting in significant evasion from monoclonal antibody therapeutics and vaccines. Understanding how commonly elicited antibodies can broaden to cross-neutralize escape variants is crucial. We isolate IGHV3-53, using "public" monoclonal antibodies (mAbs) from an individual 7 months post infection with the ancestral virus and identify antibodies that exhibit potent and broad cross-neutralization, extending to the BA.1, BA.2, and BA.4/BA.5 sublineages of Omicron. Deep mutational scanning reveals these mAbs' high resistance to viral escape. Structural analysis via cryoelectron microscopy of a representative broadly neutralizing antibody, CAB-A17, in complex with the Omicron BA.1 spike highlights the structural underpinnings of this broad neutralization. By reintroducing somatic hypermutations into a germline-reverted CAB-A17, we delineate the role of affinity maturation in the development of cross-neutralization by a public class of antibodies.

摘要

严重急性呼吸综合征冠状病毒 2(SARS-CoV-2)奥密克戎变异株的后代现在几乎占 SARS-CoV-2 感染的全部。奥密克戎变异株及其亚谱系的刺突糖蛋白与大流行的原始株和第一代疫苗株高度分化,导致单克隆抗体治疗药物和疫苗的显著逃逸。了解通常诱导的抗体如何广泛交叉中和逃逸变异体至关重要。我们分离出 IGHV3-53,使用个体感染 SARS-CoV-2 后 7 个月的“公共”单克隆抗体(mAb),并鉴定出具有强大和广泛交叉中和作用的抗体,可扩展到奥密克戎的 BA.1、BA.2 和 BA.4/BA.5 亚谱系。深度突变扫描显示这些 mAb 对病毒逃逸具有很高的抗性。通过冷冻电镜对代表性广谱中和抗体 CAB-A17 与奥密克戎 BA.1 刺突复合物的结构分析,突出了这种广泛中和的结构基础。通过将体细胞超突变重新引入到一个基因座回复的 CAB-A17 中,我们阐明了亲和力成熟在公共抗体类交叉中和发展中的作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b6ef/11228396/386bb12da0ee/fx1.jpg

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