Messyasz Adriana, Männistö Minna K, Kerkhof Lee J, Häggblom Max M
Department of Biochemistry and Microbiology, Rutgers University, New Brunswick, New Jersey, USA.
Natural Resources Institute Finland, Rovaniemi, Finland.
Environ Microbiol. 2024 May;26(5):e16640. doi: 10.1111/1462-2920.16640.
Increased temperatures in Arctic tundra ecosystems are leading to higher microbial respiration rates of soil organic matter, resulting in the release of carbon dioxide and methane. To understand the effects of this microbial activity, it is important to better characterize the diverse microbial communities in Arctic soil. Our goal is to refine our understanding of the phylogenetic diversity of Terriglobia, a common but elusive group within the Acidobacteriota phylum. This will help us link this diversity to variations in carbon and nitrogen usage patterns. We used long-read Oxford Nanopore MinION sequences in combination with metagenomic short-read sequences to assemble complete Acidobacteriota genomes. This allowed us to build multi-locus phylogenies and annotate pangenome markers to distinguish Acidobacteriota strains from several tundra soil isolates. We identified a phylogenetic cluster containing four new species previously associated with Edaphobacter lichenicola. We conclude that this cluster represents a new genus, which we have named Tunturibacter. We describe four new species: Tunturibacter lichenicola comb. nov., Tunturibacter empetritectus sp. nov., Tunturibacter gelidoferens sp. nov., and Tunturibacter psychrotolerans sp. nov. By uncovering new species and strains within the Terriglobia and improving the accuracy of their phylogenetic placements, we hope to enhance our understanding of this complex phylum and shed light on the mechanisms that shape microbial communities in polar soils.
北极苔原生态系统温度升高导致土壤有机质的微生物呼吸速率加快,从而释放出二氧化碳和甲烷。为了解这种微生物活动的影响,更准确地描述北极土壤中多样的微生物群落至关重要。我们的目标是深化对Terriglobia的系统发育多样性的理解,Terriglobia是酸杆菌门中一个常见但难以捉摸的类群。这将有助于我们将这种多样性与碳和氮利用模式的变化联系起来。我们使用长读长的牛津纳米孔MinION序列与宏基因组短读长序列相结合,来组装完整的酸杆菌门基因组。这使我们能够构建多位点系统发育树并注释泛基因组标记,以区分来自几种苔原土壤分离株的酸杆菌门菌株。我们鉴定出一个系统发育簇,其中包含四个先前与地衣嗜杆菌相关的新物种。我们得出结论,这个簇代表一个新属,我们将其命名为冻土杆菌属。我们描述了四个新物种:地衣冻土杆菌(Tunturibacter lichenicola comb. nov.)、岩高兰冻土杆菌(Tunturibacter empetritectus sp. nov.)、嗜冷冻土杆菌(Tunturibacter gelidoferens sp. nov.)和耐冷冻土杆菌(Tunturibacter psychrotolerans sp. nov.)。通过揭示Terriglobia内的新物种和菌株,并提高其系统发育定位的准确性,我们希望增进对这个复杂门类的理解,并阐明塑造极地土壤微生物群落的机制。