• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

新属冻土杆菌的基因组分析与描述扩展了苔原土壤中地球杆菌属的多样性。

Genome analysis and description of Tunturibacter gen. nov. expands the diversity of Terriglobia in tundra soils.

作者信息

Messyasz Adriana, Männistö Minna K, Kerkhof Lee J, Häggblom Max M

机构信息

Department of Biochemistry and Microbiology, Rutgers University, New Brunswick, New Jersey, USA.

Natural Resources Institute Finland, Rovaniemi, Finland.

出版信息

Environ Microbiol. 2024 May;26(5):e16640. doi: 10.1111/1462-2920.16640.

DOI:10.1111/1462-2920.16640
PMID:38775217
Abstract

Increased temperatures in Arctic tundra ecosystems are leading to higher microbial respiration rates of soil organic matter, resulting in the release of carbon dioxide and methane. To understand the effects of this microbial activity, it is important to better characterize the diverse microbial communities in Arctic soil. Our goal is to refine our understanding of the phylogenetic diversity of Terriglobia, a common but elusive group within the Acidobacteriota phylum. This will help us link this diversity to variations in carbon and nitrogen usage patterns. We used long-read Oxford Nanopore MinION sequences in combination with metagenomic short-read sequences to assemble complete Acidobacteriota genomes. This allowed us to build multi-locus phylogenies and annotate pangenome markers to distinguish Acidobacteriota strains from several tundra soil isolates. We identified a phylogenetic cluster containing four new species previously associated with Edaphobacter lichenicola. We conclude that this cluster represents a new genus, which we have named Tunturibacter. We describe four new species: Tunturibacter lichenicola comb. nov., Tunturibacter empetritectus sp. nov., Tunturibacter gelidoferens sp. nov., and Tunturibacter psychrotolerans sp. nov. By uncovering new species and strains within the Terriglobia and improving the accuracy of their phylogenetic placements, we hope to enhance our understanding of this complex phylum and shed light on the mechanisms that shape microbial communities in polar soils.

摘要

北极苔原生态系统温度升高导致土壤有机质的微生物呼吸速率加快,从而释放出二氧化碳和甲烷。为了解这种微生物活动的影响,更准确地描述北极土壤中多样的微生物群落至关重要。我们的目标是深化对Terriglobia的系统发育多样性的理解,Terriglobia是酸杆菌门中一个常见但难以捉摸的类群。这将有助于我们将这种多样性与碳和氮利用模式的变化联系起来。我们使用长读长的牛津纳米孔MinION序列与宏基因组短读长序列相结合,来组装完整的酸杆菌门基因组。这使我们能够构建多位点系统发育树并注释泛基因组标记,以区分来自几种苔原土壤分离株的酸杆菌门菌株。我们鉴定出一个系统发育簇,其中包含四个先前与地衣嗜杆菌相关的新物种。我们得出结论,这个簇代表一个新属,我们将其命名为冻土杆菌属。我们描述了四个新物种:地衣冻土杆菌(Tunturibacter lichenicola comb. nov.)、岩高兰冻土杆菌(Tunturibacter empetritectus sp. nov.)、嗜冷冻土杆菌(Tunturibacter gelidoferens sp. nov.)和耐冷冻土杆菌(Tunturibacter psychrotolerans sp. nov.)。通过揭示Terriglobia内的新物种和菌株,并提高其系统发育定位的准确性,我们希望增进对这个复杂门类的理解,并阐明塑造极地土壤微生物群落的机制。

相似文献

1
Genome analysis and description of Tunturibacter gen. nov. expands the diversity of Terriglobia in tundra soils.新属冻土杆菌的基因组分析与描述扩展了苔原土壤中地球杆菌属的多样性。
Environ Microbiol. 2024 May;26(5):e16640. doi: 10.1111/1462-2920.16640.
2
Granulicella arctica sp. nov., Granulicella mallensis sp. nov., Granulicella tundricola sp. nov. and Granulicella sapmiensis sp. nov., novel acidobacteria from tundra soil.北极 Granulicella 属新种、马氏 Granulicella 属新种、塔岛 Granulicella 属新种和萨米 Granulicella 属新种,来自冻土地带土壤中的新型酸杆菌。
Int J Syst Evol Microbiol. 2012 Sep;62(Pt 9):2097-2106. doi: 10.1099/ijs.0.031864-0. Epub 2011 Nov 4.
3
Novel isolates double the number of chemotrophic species and allow the first description of higher taxa in Acidobacteria subdivision 4.新型分离株使化能营养物种的数量增加了一倍,并首次对嗜酸菌第4亚群中的高级分类群进行了描述。
Syst Appl Microbiol. 2015 Dec;38(8):534-44. doi: 10.1016/j.syapm.2015.08.001. Epub 2015 Sep 28.
4
Comparative genomic and physiological analysis provides insights into the role of Acidobacteria in organic carbon utilization in Arctic tundra soils.比较基因组学和生理学分析为研究酸杆菌在北极苔原生态系统土壤中有机碳利用中的作用提供了线索。
FEMS Microbiol Ecol. 2012 Nov;82(2):341-55. doi: 10.1111/j.1574-6941.2012.01381.x. Epub 2012 Apr 30.
5
Linking ecology and systematics of acidobacteria: Distinct habitat preferences of the Acidobacteriia and Blastocatellia in tundra soils.将生态学与酸杆菌系统学联系起来:在苔原生态土壤中,酸杆菌和 Blastocatellia 具有明显不同的生境偏好。
PLoS One. 2020 Mar 17;15(3):e0230157. doi: 10.1371/journal.pone.0230157. eCollection 2020.
6
Acidobacteria dominate the active bacterial communities of Arctic tundra with widely divergent winter-time snow accumulation and soil temperatures.在冬季积雪量和土壤温度差异极大的北极冻原中,酸杆菌是活跃的细菌群落中的优势菌。
FEMS Microbiol Ecol. 2013 Apr;84(1):47-59. doi: 10.1111/1574-6941.12035. Epub 2012 Nov 21.
7
Tundrisphaera lichenicola gen. nov., sp. nov., a psychrotolerant representative of the family Isosphaeraceae from lichen-dominated tundra soils.地衣栖寒球藻属,新属,新种,一种来自地衣主导的苔原土壤的等球藻科耐冷代表物种。
Int J Syst Evol Microbiol. 2017 Sep;67(9):3583-3589. doi: 10.1099/ijsem.0.002172. Epub 2017 Aug 22.
8
Granulicella sibirica sp. nov., a psychrotolerant acidobacterium isolated from an organic soil layer in forested tundra, West Siberia.西伯利亚粒状杆菌新种,一种从西西伯利亚森林苔原有机土壤层分离出的耐冷嗜酸菌。
Int J Syst Evol Microbiol. 2019 Apr;69(4):1195-1201. doi: 10.1099/ijsem.0.003290. Epub 2019 Feb 18.
9
Edaphobacter flagellatus sp. nov. and Edaphobacter bradus sp. nov., two acidobacteria isolated from forest soil.新种鞭毛土栖杆菌和新种迟缓土栖杆菌,从森林土壤中分离出的两种酸杆菌。
Int J Syst Evol Microbiol. 2018 Aug;68(8):2530-2537. doi: 10.1099/ijsem.0.002871. Epub 2018 Jun 29.
10
Blastocatella fastidiosa gen. nov., sp. nov., isolated from semiarid savanna soil - the first described species of Acidobacteria subdivision 4. Blastocatella fastidiosa 属,新属,种名新颖,从半干旱稀树草原土壤中分离得到,是酸杆菌亚群 4 中第一个被描述的物种。
Syst Appl Microbiol. 2013 Mar;36(2):82-9. doi: 10.1016/j.syapm.2012.11.002. Epub 2012 Dec 23.

引用本文的文献

1
Microbial-Mediated Soil Nutrient Enhancement in Moso Bamboo- vs. Mixed Plantings.毛竹与混交林中微生物介导的土壤养分增强作用
Plants (Basel). 2025 Jun 18;14(12):1868. doi: 10.3390/plants14121868.
2
Genome analysis reveals diverse novel psychrotolerant species in Arctic tundra soils.基因组分析揭示了北极苔原土壤中多种新型耐冷物种。
ISME Commun. 2025 Apr 25;5(1):ycaf071. doi: 10.1093/ismeco/ycaf071. eCollection 2025 Jan.
3
Tunturi virus isolates and metagenome-assembled viral genomes provide insights into the virome of Acidobacteriota in Arctic tundra soils.
通图里病毒分离株和宏基因组组装病毒基因组为了解北极冻原土壤中酸杆菌门的病毒群落提供了见解。
Microbiome. 2025 Mar 20;13(1):79. doi: 10.1186/s40168-025-02053-6.
4
Validation List no. 219. Valid publication of new names and new combinations effectively published outside the IJSEM.验证列表第219号。在《国际系统与进化微生物学杂志》之外有效发表的新名称和新组合的有效出版物。
Int J Syst Evol Microbiol. 2024 Sep;74(9). doi: 10.1099/ijsem.0.006452.