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头颈部鳞状细胞癌中的TRIM表达:通过生物信息学探索泛素化、免疫浸润和信号通路之间的联系

TRIM Expression in HNSCC: Exploring the Link Between Ubiquitination, Immune Infiltration, and Signaling Pathways Through Bioinformatics.

作者信息

Wang Kun, Zhu Wei, Huang Wei, Huang Kangkang, Luo Huidan, Long Lu, Yi Bin

机构信息

Department of Clinical Laboratory, Xiangya Hospital, Central South University, Changsha, Hunan Province, People's Republic of China.

Department of Pathology, Xiangya Hospital, Central South University, Changsha, Hunan Province, People's Republic of China.

出版信息

Int J Gen Med. 2024 May 24;17:2389-2405. doi: 10.2147/IJGM.S463286. eCollection 2024.

Abstract

OBJECTIVE

Ubiquitination is an important post-translational modification. However, the significance of the TRIM family of E3 ubiquitin ligases in head and neck squamous cell carcinoma (HNSCC) has not been determined. In this study, the roles of TRIM E3 ubiquitin ligases in lymphovascular invasion in head and neck squamous cell carcinoma (HNSCC) were evaluated.

MATERIALS AND METHODS

TRIM expression and related parameters were obtained from UbiBrowser, UALCAN, TIMER, TISIDB, LinkedOmics, STRING, and GeneMANIA databases. Immunohistochemistry was used to confirm their expression.

RESULTS

, and were upregulated in HNSCC with lymphovascular invasion. TRIM expression was strongly associated with immune infiltration, including key treatment targets, like and . Co-expressed genes and possible ubiquitination substrates included tumor-related factors. The TRIMs had predicted roles in ubiquitination-related pathways and vital signaling pathways, eg, , and signaling pathways.

CONCLUSION

Ubiquitination mediated by four TRIMs might be involved in the regulation of tumor immunity, laying the foundation for future studies of the roles of the TRIM family on the prediction and personalized medicine in HNSCC. The four TRIMs might exert oncogenic effects by promoting lymphovascular invasion in HNSCC.

摘要

目的

泛素化是一种重要的翻译后修饰。然而,E3泛素连接酶TRIM家族在头颈部鳞状细胞癌(HNSCC)中的意义尚未确定。在本研究中,评估了TRIM E3泛素连接酶在头颈部鳞状细胞癌(HNSCC)淋巴管浸润中的作用。

材料与方法

从UbiBrowser、UALCAN、TIMER、TISIDB、LinkedOmics、STRING和GeneMANIA数据库中获取TRIM表达及相关参数。采用免疫组织化学法证实其表达。

结果

在伴有淋巴管浸润的HNSCC中,[具体基因名称1]、[具体基因名称2]和[具体基因名称3]上调。TRIM表达与免疫浸润密切相关,包括关键治疗靶点,如[具体基因名称4]和[具体基因名称5]。共表达基因和可能的泛素化底物包括肿瘤相关因子。TRIMs在泛素化相关途径和重要信号通路中具有预测作用,例如[具体信号通路名称1]、[具体信号通路名称2]和[具体信号通路名称3]信号通路。

结论

四种TRIM介导的泛素化可能参与肿瘤免疫调节,为未来研究TRIM家族在HNSCC预测和个性化医学中的作用奠定基础。这四种TRIM可能通过促进HNSCC中的淋巴管浸润发挥致癌作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b5aa/11132118/d1c5f1e2cf0d/IJGM-17-2389-g0001.jpg

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