2016年美国新发传染病项目中代表前10种核糖体分型的监测分离株的全基因组序列。
Complete genome sequences of surveillance isolates representing the top 10 ribotypes from the Emerging Infections Program, United States, 2016.
作者信息
Adamczyk Michelle, Vlachos Nicholas, Breaker Erin, Orazi Giulia, Paulick Ashley L, Rowe Lori A, McAllister Gillian, Machado María-José, Korhonen Lauren, Guh Alice Y, Rasheed J Kamile, Karlsson Maria, McKay Susannah L, Lutgring Joseph D, Gargis Amy S
机构信息
Division of Healthcare Quality Promotion, National Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia, USA.
Biotechnology Core Facility Branch, Division of Scientific Resources, Centers for Disease Control and Prevention, Atlanta, Georgia, USA.
出版信息
Microbiol Resour Announc. 2024 Jul 18;13(7):e0112823. doi: 10.1128/mra.01128-23. Epub 2024 May 29.
Abstract
Ten isolates representing the top 10 ribotypes collected in 2016 through the Emerging Infections Program underwent long-read sequencing to obtain high-quality reference genome assemblies. These isolates are publicly available through the CDC & FDA Antibiotic Resistance Isolate Bank.
摘要
通过新兴感染项目在2016年收集的代表前10种核糖型的10个分离株进行了长读测序，以获得高质量的参考基因组组装。这些分离株可通过疾病控制与预防中心及食品药品监督管理局抗生素耐药性分离株库公开获取。
相似文献
1
Complete genome sequences of surveillance isolates representing the top 10 ribotypes from the Emerging Infections Program, United States, 2016.2016年美国新发传染病项目中代表前10种核糖体分型的监测分离株的全基因组序列。
Microbiol Resour Announc. 2024 Jul 18;13(7):e0112823. doi: 10.1128/mra.01128-23. Epub 2024 May 29.
2
Characterization of Clostridioides difficile Isolates Available through the CDC & FDA Antibiotic Resistance Isolate Bank.通过美国疾病控制与预防中心（CDC）及美国食品药品监督管理局（FDA）抗生素耐药性菌株库获取的艰难梭菌分离株的特性分析。
Microbiol Resour Announc. 2021 Jan 7;10(1):e01011-20. doi: 10.1128/MRA.01011-20.
3
Transition From PCR-Ribotyping to Whole Genome Sequencing Based Typing of .从基于PCR核糖体分型到基于全基因组测序分型的转变 。 （原文结尾不完整，翻译可能不太准确，建议补充完整原文以便更准确翻译）
Front Cell Infect Microbiol. 2021 Jun 1;11:681518. doi: 10.3389/fcimb.2021.681518. eCollection 2021.
4
Epidemiologic trends in Clostridioides difficile isolate ribotypes in United States from 2011 to 2016.2011 年至 2016 年美国艰难梭菌分离株核糖体分型的流行病学趋势。
Anaerobe. 2020 Jun;63:102185. doi: 10.1016/j.anaerobe.2020.102185. Epub 2020 May 6.
5
A US-based national surveillance study for the susceptibility and epidemiology of isolates with special reference to ridinilazole: 2020-2021.一项基于美国的全国性监测研究，旨在调查具有特殊参考意义的利奈唑胺敏感性和流行病学的 分离株：2020-2021 年。
Antimicrob Agents Chemother. 2023 Oct 18;67(10):e0034923. doi: 10.1128/aac.00349-23. Epub 2023 Sep 20.
6
Reference Susceptibility Testing and Genomic Surveillance of Clostridioides difficile, United States, 2012-17.美国 2012-2017 年艰难梭菌的药敏试验和基因组监测
Clin Infect Dis. 2023 Mar 4;76(5):890-896. doi: 10.1093/cid/ciac817.
7
Whole-Genome Sequencing Reveals the High Nosocomial Transmission and Antimicrobial Resistance of Clostridioides difficile in a Single Center in China, a Four-Year Retrospective Study.全基因组测序揭示中国单中心艰难梭菌的高医院内传播和耐药性：一项四年回顾性研究。
Microbiol Spectr. 2022 Feb 23;10(1):e0132221. doi: 10.1128/spectrum.01322-21. Epub 2022 Jan 12.
8
Antimicrobial susceptibility of Clostridioides difficile isolated from diarrhoeal stool specimens of Canadian patients: summary of results from the Canadian Clostridioides difficile (CAN-DIFF) surveillance study from 2013 to 2017.加拿大患者腹泻粪便标本中分离的艰难梭菌的药敏情况：2013 年至 2017 年加拿大艰难梭菌（CAN-DIFF）监测研究的结果摘要。
J Antimicrob Chemother. 2020 Jul 1;75(7):1824-1832. doi: 10.1093/jac/dkaa118.
9
Microevolution within ST11 group Clostridioides difficile isolates through mobile genetic elements based on complete genome sequencing.基于全基因组测序的移动遗传元件分析 ST11 组艰难梭菌分离株的微进化。
BMC Genomics. 2019 Oct 30;20(1):796. doi: 10.1186/s12864-019-6184-1.
10
Molecular epidemiology of predominant and emerging Clostridioides difficile ribotypes.主要和新兴艰难梭菌核糖体分型的分子流行病学。
J Microbiol Methods. 2020 Aug;175:105974. doi: 10.1016/j.mimet.2020.105974. Epub 2020 Jun 10.
本文引用的文献
1
Plasmids of Clostridioides difficile.艰难梭菌的质粒
Curr Opin Microbiol. 2022 Feb;65:87-94. doi: 10.1016/j.mib.2021.10.016. Epub 2021 Nov 11.
2
Characterization of Clostridioides difficile Isolates Available through the CDC & FDA Antibiotic Resistance Isolate Bank.通过美国疾病控制与预防中心（CDC）及美国食品药品监督管理局（FDA）抗生素耐药性菌株库获取的艰难梭菌分离株的特性分析。
Microbiol Resour Announc. 2021 Jan 7;10(1):e01011-20. doi: 10.1128/MRA.01011-20.
3
An survey of extrachromosomal elements .染色体外元件调查
Microb Genom. 2019 Sep;5(9). doi: 10.1099/mgen.0.000296.
4
High Prevalence and Genetic Diversity of Large phiCD211 (phiCDIF1296T)-Like Prophages in Clostridioides difficile.艰难梭菌中高流行率和遗传多样性的大型 phiCD211（phiCDIF1296T）样噬菌体。
Appl Environ Microbiol. 2018 Jan 17;84(3). doi: 10.1128/AEM.02164-17. Print 2018 Feb 1.
5
Database resources of the National Center for Biotechnology Information.国家生物技术信息中心数据库资源。
Nucleic Acids Res. 2018 Jan 4;46(D1):D8-D13. doi: 10.1093/nar/gkx1095.
6
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.单轮循环器：从短读长和长读长测序数据中解析细菌基因组组装结果
PLoS Comput Biol. 2017 Jun 8;13(6):e1005595. doi: 10.1371/journal.pcbi.1005595. eCollection 2017 Jun.
7
NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
8
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes：一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
9
Basic local alignment search tool.基本局部比对搜索工具
J Mol Biol. 1990 Oct 5;215(3):403-10. doi: 10.1016/S0022-2836(05)80360-2.
Zotero 插件