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本文引用的文献

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Curr Opin Microbiol. 2022 Feb;65:87-94. doi: 10.1016/j.mib.2021.10.016. Epub 2021 Nov 11.
2
Characterization of Clostridioides difficile Isolates Available through the CDC & FDA Antibiotic Resistance Isolate Bank.通过美国疾病控制与预防中心(CDC)及美国食品药品监督管理局(FDA)抗生素耐药性菌株库获取的艰难梭菌分离株的特性分析。
Microbiol Resour Announc. 2021 Jan 7;10(1):e01011-20. doi: 10.1128/MRA.01011-20.
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An survey of extrachromosomal elements   .染色体外元件调查
Microb Genom. 2019 Sep;5(9). doi: 10.1099/mgen.0.000296.
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High Prevalence and Genetic Diversity of Large phiCD211 (phiCDIF1296T)-Like Prophages in Clostridioides difficile.艰难梭菌中高流行率和遗传多样性的大型 phiCD211(phiCDIF1296T)样噬菌体。
Appl Environ Microbiol. 2018 Jan 17;84(3). doi: 10.1128/AEM.02164-17. Print 2018 Feb 1.
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Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.单轮循环器:从短读长和长读长测序数据中解析细菌基因组组装结果
PLoS Comput Biol. 2017 Jun 8;13(6):e1005595. doi: 10.1371/journal.pcbi.1005595. eCollection 2017 Jun.
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NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
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SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes:一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
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Basic local alignment search tool.基本局部比对搜索工具
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2016年美国新发传染病项目中代表前10种核糖体分型的监测分离株的全基因组序列。

Complete genome sequences of surveillance isolates representing the top 10 ribotypes from the Emerging Infections Program, United States, 2016.

作者信息

Adamczyk Michelle, Vlachos Nicholas, Breaker Erin, Orazi Giulia, Paulick Ashley L, Rowe Lori A, McAllister Gillian, Machado María-José, Korhonen Lauren, Guh Alice Y, Rasheed J Kamile, Karlsson Maria, McKay Susannah L, Lutgring Joseph D, Gargis Amy S

机构信息

Division of Healthcare Quality Promotion, National Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia, USA.

Biotechnology Core Facility Branch, Division of Scientific Resources, Centers for Disease Control and Prevention, Atlanta, Georgia, USA.

出版信息

Microbiol Resour Announc. 2024 Jul 18;13(7):e0112823. doi: 10.1128/mra.01128-23. Epub 2024 May 29.

DOI:10.1128/mra.01128-23
PMID:38809010
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11256855/
Abstract

Ten isolates representing the top 10 ribotypes collected in 2016 through the Emerging Infections Program underwent long-read sequencing to obtain high-quality reference genome assemblies. These isolates are publicly available through the CDC & FDA Antibiotic Resistance Isolate Bank.

摘要

通过新兴感染项目在2016年收集的代表前10种核糖型的10个分离株进行了长读测序,以获得高质量的参考基因组组装。这些分离株可通过疾病控制与预防中心及食品药品监督管理局抗生素耐药性分离株库公开获取。