通过美国疾病控制与预防中心（CDC）及美国食品药品监督管理局（FDA）抗生素耐药性菌株库获取的艰难梭菌分离株的特性分析。
Characterization of Clostridioides difficile Isolates Available through the CDC & FDA Antibiotic Resistance Isolate Bank.
作者信息
Paulick Ashley, Adamczyk Michelle, Anderson Karen, Vlachos Nick, Machado María-José, McAllister Gillian, Korhonen Lauren, Guh Alice Y, Halpin Alison Laufer, Rasheed J Kamile, Karlsson Maria, Lutgring Joseph D, Gargis Amy S
机构信息
Division of Healthcare Quality Promotion, National Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia, USA.
Goldbelt C6, LLC, Chesapeake, Virginia, USA.
出版信息
Microbiol Resour Announc. 2021 Jan 7;10(1):e01011-20. doi: 10.1128/MRA.01011-20.
Abstract
Thirty isolates collected in 2016 through the Centers for Disease Control and Prevention Emerging Infections Program were selected for reference antimicrobial susceptibility testing and whole-genome sequencing. Here, we present the genetic characteristics of these isolates and announce their availability in the CDC & FDA Antibiotic Resistance Isolate Bank.
摘要
通过疾病控制与预防中心新发传染病项目在2016年收集的30株分离株被选用于参考抗菌药物敏感性测试和全基因组测序。在此，我们展示这些分离株的遗传特征，并宣布它们可在疾病预防控制中心和食品药品监督管理局抗生素耐药性分离株库中获取。
相似文献
1
Characterization of Clostridioides difficile Isolates Available through the CDC & FDA Antibiotic Resistance Isolate Bank.通过美国疾病控制与预防中心（CDC）及美国食品药品监督管理局（FDA）抗生素耐药性菌株库获取的艰难梭菌分离株的特性分析。
Microbiol Resour Announc. 2021 Jan 7;10(1):e01011-20. doi: 10.1128/MRA.01011-20.
2
Complete genome sequences of surveillance isolates representing the top 10 ribotypes from the Emerging Infections Program, United States, 2016.2016年美国新发传染病项目中代表前10种核糖体分型的监测分离株的全基因组序列。
Microbiol Resour Announc. 2024 Jul 18;13(7):e0112823. doi: 10.1128/mra.01128-23. Epub 2024 May 29.
3
Correction for Paulick et al., "Characterization of Clostridioides difficile Isolates Available through the CDC & FDA Antibiotic Resistance Isolate Bank".对保利克等人的《通过疾病控制与预防中心及美国食品药品监督管理局抗生素耐药性菌株库可获得的艰难梭菌分离株的特征分析》的勘误
Microbiol Resour Announc. 2022 May 19;11(5):e0030222. doi: 10.1128/mra.00302-22. Epub 2022 Apr 27.
4
Whole-Genome Sequencing Reveals the High Nosocomial Transmission and Antimicrobial Resistance of Clostridioides difficile in a Single Center in China, a Four-Year Retrospective Study.全基因组测序揭示中国单中心艰难梭菌的高医院内传播和耐药性：一项四年回顾性研究。
Microbiol Spectr. 2022 Feb 23;10(1):e0132221. doi: 10.1128/spectrum.01322-21. Epub 2022 Jan 12.
5
Antibiotic Resistance and Biofilm Production Capacity in .. 中的抗生素耐药性和生物膜生成能力
Front Cell Infect Microbiol. 2021 Aug 4;11:683464. doi: 10.3389/fcimb.2021.683464. eCollection 2021.
6
Molecular Epidemiology and Antimicrobial Resistance of in Hospitalized Patients From Mexico.墨西哥住院患者的分子流行病学与抗菌药物耐药性
Front Microbiol. 2022 Mar 10;12:787451. doi: 10.3389/fmicb.2021.787451. eCollection 2021.
7
FDA-CDC Antimicrobial Resistance Isolate Bank: a Publicly Available Resource To Support Research, Development, and Regulatory Requirements.FDA-CDC 抗菌药物耐药菌分离株库：一个支持研究、开发和监管要求的公共资源。
J Clin Microbiol. 2018 Jan 24;56(2). doi: 10.1128/JCM.01415-17. Print 2018 Feb.
8
Dogs are carriers of Clostridioides difficile lineages associated with human community-acquired infections.狗是与人类社区获得性感染相关的艰难梭菌谱系的携带者。
Anaerobe. 2021 Feb;67:102317. doi: 10.1016/j.anaerobe.2020.102317. Epub 2021 Jan 6.
9
Antimicrobial susceptibility of Clostridioides difficile isolated from diarrhoeal stool specimens of Canadian patients: summary of results from the Canadian Clostridioides difficile (CAN-DIFF) surveillance study from 2013 to 2017.加拿大患者腹泻粪便标本中分离的艰难梭菌的药敏情况：2013 年至 2017 年加拿大艰难梭菌（CAN-DIFF）监测研究的结果摘要。
J Antimicrob Chemother. 2020 Jul 1;75(7):1824-1832. doi: 10.1093/jac/dkaa118.
10
U.S.-Based National Surveillance for Fidaxomicin Susceptibility of Clostridioides difficile-Associated Diarrheal Isolates from 2013 to 2016.2013 年至 2016 年美国基于国家监测的艰难梭菌相关性腹泻分离株对 fidaxomicin 敏感性研究。
Antimicrob Agents Chemother. 2019 Jun 24;63(7). doi: 10.1128/AAC.00391-19. Print 2019 Jul.
引用本文的文献
1
Flagellar switch inverted repeats impact heterogeneity in flagellar gene expression and thus C. difficile RT027/MLST1 virulence.鞭毛开关反向重复序列影响鞭毛基因表达的异质性，进而影响艰难梭菌RT027/MLST1的毒力。
Cell Rep. 2025 Jun 24;44(6):115830. doi: 10.1016/j.celrep.2025.115830. Epub 2025 Jun 11.
2
Flagellar switch inverted repeat impacts flagellar invertibility and varies RT027/MLST1 virulence.鞭毛开关反向重复序列影响鞭毛的可逆性并改变RT027/MLST1毒力。
bioRxiv. 2024 Sep 24:2023.06.22.546185. doi: 10.1101/2023.06.22.546185.
3
Complete genome sequences of surveillance isolates representing the top 10 ribotypes from the Emerging Infections Program, United States, 2016.2016年美国新发传染病项目中代表前10种核糖体分型的监测分离株的全基因组序列。
Microbiol Resour Announc. 2024 Jul 18;13(7):e0112823. doi: 10.1128/mra.01128-23. Epub 2024 May 29.
4
Decoding a cryptic mechanism of metronidazole resistance among globally disseminated fluoroquinolone-resistant Clostridioides difficile.解析全球流行的氟喹诺酮耐药艰难梭菌中甲硝唑耐药的神秘机制
Nat Commun. 2023 Jul 12;14(1):4130. doi: 10.1038/s41467-023-39429-x.
5
Reference Susceptibility Testing and Genomic Surveillance of Clostridioides difficile, United States, 2012-17.美国 2012-2017 年艰难梭菌的药敏试验和基因组监测
Clin Infect Dis. 2023 Mar 4;76(5):890-896. doi: 10.1093/cid/ciac817.
6
Comparison of Illumina and Oxford Nanopore Sequencing Technologies for Pathogen Detection from Clinical Matrices Using Molecular Inversion Probes.Illumina 和 Oxford Nanopore 测序技术在基于分子反转探针的临床样本病原体检测中的比较。
J Mol Diagn. 2022 Apr;24(4):395-405. doi: 10.1016/j.jmoldx.2021.12.005. Epub 2022 Jan 25.
本文引用的文献
1
Constitutive expression of the cryptic vanGCd operon promotes vancomycin resistance in Clostridioides difficile clinical isolates.隐秘 vanGCd 操纵子的组成型表达促进艰难梭菌临床分离株对万古霉素的耐药性。
J Antimicrob Chemother. 2020 Apr 1;75(4):859-867. doi: 10.1093/jac/dkz513.
2
Open-access bacterial population genomics: BIGSdb software, the PubMLST.org website and their applications.开放获取的细菌群体基因组学：BIGSdb软件、PubMLST.org网站及其应用。
Wellcome Open Res. 2018 Sep 24;3:124. doi: 10.12688/wellcomeopenres.14826.1. eCollection 2018.
3
New York City House Mice (Mus musculus) as Potential Reservoirs for Pathogenic Bacteria and Antimicrobial Resistance Determinants.纽约市家鼠（Mus musculus）作为潜在的致病菌和抗生素耐药性决定因素的储存库。
mBio. 2018 Apr 17;9(2):e00624-18. doi: 10.1128/mBio.00624-18.
4
Clinical Practice Guidelines for Clostridium difficile Infection in Adults and Children: 2017 Update by the Infectious Diseases Society of America (IDSA) and Society for Healthcare Epidemiology of America (SHEA).临床实践指南：成人和儿童艰难梭菌感染：美国传染病学会（IDSA）和美国医疗保健流行病学学会（SHEA）2017 年更新。
Clin Infect Dis. 2018 Mar 19;66(7):987-994. doi: 10.1093/cid/ciy149.
5
Recent advances in the understanding of antibiotic resistance in Clostridium difficile infection.艰难梭菌感染中抗生素耐药性认识的最新进展
Ther Adv Infect Dis. 2016 Feb;3(1):23-42. doi: 10.1177/2049936115622891.
6
A cfr-like gene from Clostridium difficile confers multiple antibiotic resistance by the same mechanism as the cfr gene.来自艰难梭菌的一个类cfr基因通过与cfr基因相同的机制赋予多重抗生素抗性。
Antimicrob Agents Chemother. 2015 Sep;59(9):5841-3. doi: 10.1128/AAC.01274-15. Epub 2015 Jul 6.
7
Development and validation of an internationally-standardized, high-resolution capillary gel-based electrophoresis PCR-ribotyping protocol for Clostridium difficile.艰难梭菌国际标准化高分辨率毛细管凝胶电泳PCR核糖分型方案的开发与验证
PLoS One. 2015 Feb 13;10(2):e0118150. doi: 10.1371/journal.pone.0118150. eCollection 2015.
8
Trimmomatic: a flexible trimmer for Illumina sequence data.Trimmomatic：一款适用于 Illumina 测序数据的灵活修剪工具。
Bioinformatics. 2014 Aug 1;30(15):2114-20. doi: 10.1093/bioinformatics/btu170. Epub 2014 Apr 1.
9
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes：一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
10
Clostridium difficile infection caused by the epidemic BI/NAP1/027 strain.由流行的BI/NAP1/027菌株引起的艰难梭菌感染。
Gastroenterology. 2009 May;136(6):1913-24. doi: 10.1053/j.gastro.2009.02.073. Epub 2009 May 7.
Zotero 插件