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线粒体DNA证据反映了中国南方(寡毛纲:巨蚓科)的高度遗传分化。

Mitochondrial DNA evidence reflects high genetic divergence of (Oligochaeta: Megascolecidae) in southern China.

作者信息

Li Jiali, Jiang Jibao, Jin Qing, Yuan Zhu, Qiu Jiangping

机构信息

School of Agriculture and Biology Shanghai Jiao Tong University Shanghai China.

School of Pharmacy Shanghai University of Medicine & Health Sciences Shanghai China.

出版信息

Ecol Evol. 2024 May 31;14(6):e11452. doi: 10.1002/ece3.11452. eCollection 2024 Jun.

Abstract

(Perrier, 1872), a natural resource used in traditional Chinese medicine (Guang-dilong) with high economic value, is widely distributed in forests and farmland habitats in the hilly areas of southern China. To investigate the extent of genetic differentiation and diversity in , a population genetic structure study was performed on 157 samples from 75 locations in southern China using the mitochondrial genes , , , , and . The results indicated that had a high level of genetic diversity, and variation within populations was the main source of the total variation. Six deeply divergent mitochondrial clades (I-VI) were detected using both phylogenetic tree and haplotype network analyses. This finding was supported by the high Kimura two-parameter genetic distance and the pairwise fixation index value obtained based on the gene. No significant phylogeographic structures were observed. The widespread geographic distribution of clades II, IV, and VI suggested a recent demographic expansion based on multiple analysis results. These results include a high level of Hd and low , star-shaped haplotype network structures with a high number of less frequent haplotypes, significantly negative neutrality test values, and a unimodal mismatch distribution pattern. The divergence time estimates and reconstruction of the ancestral area revealed that originated in Guangxi Province and underwent initial intraspecific diversification in the early Pliocene to generate clade I. Then, it gradually dispersed eastward and rapidly differentiated into clades II-V during the Pleistocene. The Yunnan-Guizhou Plateau and Nanling and Wuyi Mountains might act as geographical barriers for the spread of to the west and north.

摘要

(Perrier,1872),一种用于传统中药(广地龙)的具有高经济价值的自然资源,广泛分布于中国南方丘陵地区的森林和农田栖息地。为了调查[物种名称]的遗传分化程度和多样性,利用线粒体基因[基因名称1]、[基因名称2]、[基因名称3]、[基因名称4]和[基因名称5]对来自中国南方75个地点的157个样本进行了群体遗传结构研究。结果表明,[物种名称]具有高水平的遗传多样性,群体内变异是总变异的主要来源。通过系统发育树和单倍型网络分析均检测到六个深度分化的线粒体分支(I - VI)。基于[基因名称]获得的高Kimura双参数遗传距离和成对固定指数值支持了这一发现。未观察到明显的系统地理结构。基于多项分析结果,分支II、IV和VI的广泛地理分布表明最近的种群扩张。这些结果包括高水平的单倍型多样性(Hd)和低核苷酸多样性(π)、具有大量低频单倍型的星形单倍型网络结构、显著负的中性检验值以及单峰错配分布模式。分化时间估计和祖先区域重建表明,[物种名称]起源于广西省,并在上新世早期经历了最初的种内分化产生分支I。然后,它逐渐向东扩散,并在更新世迅速分化为分支II - V。云贵高原以及南岭和武夷山可能作为[物种名称]向西和向北扩散的地理屏障。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6f88/11140451/fb489fc28fb4/ECE3-14-e11452-g003.jpg

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