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首次对半咸水多毛类动物的遗传评估:从中国东南和越南北部采集的样本线粒体序列显示出强烈的遗传分化和种群扩张。

First genetic assessment of brackish water polychaete : mitochondrial sequences reveal strong genetic differentiation and population expansion in samples collected from southeast China and north Vietnam.

机构信息

Department of Food and Environmental Engineering, Key Laboratory for Marine Estuary Fishery Resources Protection of Yangjiang City, Yangjiang Polytechnic, Yangjiang, Guangdong 529500, China.

College of Animal Science and Technology, Zhongkai University of Agriculture and Engineering, Guangzhou, Guangdong 520175, China.

出版信息

Zool Res. 2020 Jan 18;41(1):61-69. doi: 10.24272/j.issn.2095-8137.2020.006.

Abstract

is a widespread benthic polychaete worm found in coastal brackish waters of the west Pacific. It has high ecological and economic value as a biomarker of water quality and as a high-quality feed in aquaculture and fisheries and is considered a delicacy in some areas of Asia. However, it has experienced a marked reduction in recent years due to overexploitation as well as changes in the environment and climate. Here, to comprehensively understand its genetic background and thus provide insights for better conservation and utilization of this species, we assessed the genetic variability and demographic history of individuals sampled from eight locations along the coasts of southeast China and north Vietnam based on mitochondrial cytochrome c oxidase I ( ) sequences. We observed high haplotype diversity ( ), with an average of 0.926, but relatively low nucleotide diversity ( ), with a mean of 0.032 across all samples. A total of 94 polymorphic sites and 85 haplotypes were identified among 320 individuals. The pairwise genetic distances among haplotypes ranged from 0.001 to 0.067, with the high intraspecific divergence possibly reflecting geographic isolation and gene pool fragmentation. Significant genetic structures were revealed among the studied locations; specifically, the eight locations could be treated as six genetically different populations based on pairwise results (0.026-0.951, <0.01). A significant pattern of isolation-by-distance was detected between the genetic and geographic distances ( =0.873, =0.001). Three geographic lineages were defined based on phylogenetic tree and network analyses of haplotypes. AMOVA results indicated that genetic variations mainly occurred among the three lineages (89.96%). Tests of neutrality and mismatch distribution suggested that underwent recent population expansion. These results provide the first report on the genetic status of and will be valuable for the management of genetic resources and better understanding of the ecology and evolution in this species.

摘要

是一种广泛分布的底栖多毛类环节蠕虫,见于西太平洋沿海水域的咸淡水交界处。它是水质的生物标志物,在水产养殖和渔业中是高质量的饲料,在亚洲的一些地区被视为美食。然而,由于过度捕捞以及环境和气候的变化,近年来它的数量明显减少。在这里,为了全面了解其遗传背景,从而为更好地保护和利用该物种提供参考,我们基于线粒体细胞色素 c 氧化酶 I ()序列,评估了从中国东南沿海和越南北部八个地点采集的个体的遗传变异性和种群历史。我们观察到高单倍型多样性(),平均值为 0.926,但核苷酸多样性()相对较低,所有样本的平均值为 0.032。在 320 个个体中,共鉴定出 94 个多态性位点和 85 个单倍型。单倍型之间的成对遗传距离范围为 0.001 至 0.067,种内高度分化可能反映了地理隔离和基因库碎片化。在所研究的地点之间揭示了显著的遗传结构;具体而言,根据成对结果(0.026-0.951,<0.01),这八个地点可以视为六个遗传上不同的种群。遗传和地理距离之间检测到显著的隔离距离模式(=0.873,=0.001)。基于系统发育树和单倍型网络分析,定义了三个地理谱系。AMOVA 结果表明,遗传变异主要发生在三个谱系之间(89.96%)。中性检验和不匹配分布检验表明,经历了近期的种群扩张。这些结果首次报道了的遗传状况,对于遗传资源的管理和更好地理解该物种的生态和进化将具有重要意义。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0a5c/6956720/87b5d73613b0/zr-41-1-61-1.jpg

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