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从纽约采集的土壤中分离出的噬菌体Janeemi的基因组序列。

Genome sequence of bacteriophage Janeemi isolated on from soil collected in New York.

作者信息

Patel Yamini, Patel Vrushali P, Syeda Amna, Saji Hannah, Gibb Bryan P

机构信息

Department of Biological and Chemical Sciences, New York Institute of Technology, Old Westbury, New York, USA.

Department of Psychology and Neuroscience, University of Colorado, Boulder, Colorado, USA.

出版信息

Microbiol Resour Announc. 2024 Jul 18;13(7):e0017724. doi: 10.1128/mra.00177-24. Epub 2024 Jun 11.

Abstract

Janeemi is a bacteriophage that infects B-2880, which was isolated from soil collected in New York City. The genome has a length of 43,877 bp and contains 69 predicted genes. Based on gene content similarity to phages in the actinobacteriophage database, Janeemi is assigned to phage cluster AZ1.

摘要

简内米是一种感染B - 2880的噬菌体,B - 2880是从纽约市收集的土壤中分离出来的。该基因组长度为43,877碱基对,包含69个预测基因。根据与放线菌噬菌体数据库中噬菌体的基因内容相似性,简内米被归入噬菌体簇AZ1。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/db79/11256828/0739a683fd56/mra.00177-24.f001.jpg

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本文引用的文献

1
Annotation of Bacteriophage Genome Sequences Using DNA Master: An Overview.
Methods Mol Biol. 2018;1681:217-229. doi: 10.1007/978-1-4939-7343-9_16.
2
Bacteriophages of spp. Display a Spectrum of Diversity and Genetic Relationships.
mBio. 2017 Aug 15;8(4):e01069-17. doi: 10.1128/mBio.01069-17.
3
PhagesDB: the actinobacteriophage database.
Bioinformatics. 2017 Mar 1;33(5):784-786. doi: 10.1093/bioinformatics/btw711.
4
The TOPCONS web server for consensus prediction of membrane protein topology and signal peptides.
Nucleic Acids Res. 2015 Jul 1;43(W1):W401-7. doi: 10.1093/nar/gkv485. Epub 2015 May 12.
6
Consed: a graphical editor for next-generation sequencing.
Bioinformatics. 2013 Nov 15;29(22):2936-7. doi: 10.1093/bioinformatics/btt515. Epub 2013 Aug 31.
7
Phamerator: a bioinformatic tool for comparative bacteriophage genomics.
BMC Bioinformatics. 2011 Oct 12;12:395. doi: 10.1186/1471-2105-12-395.
8
Assembly algorithms for next-generation sequencing data.
Genomics. 2010 Jun;95(6):315-27. doi: 10.1016/j.ygeno.2010.03.001. Epub 2010 Mar 6.
9
Identifying bacterial genes and endosymbiont DNA with Glimmer.
Bioinformatics. 2007 Mar 15;23(6):673-9. doi: 10.1093/bioinformatics/btm009. Epub 2007 Jan 19.
10
GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses.
Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W451-4. doi: 10.1093/nar/gki487.

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