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sp. nov.,从还原土壤消毒处理下的缺氧土壤中分离得到。

sp. nov., isolated from anoxic soil under the treatment of reductive soil disinfestation.

机构信息

Faculty of Agriculture, Yamagata University, Wakaba-machi 1-23, Tsuruoka, Yamagata 997-8555, Japan.

Faculty of Agriculture and Life Science, Hirosaki University, Bunkyo-cho 3, Hirosaki, Aomori 036-8561, Japan.

出版信息

Int J Syst Evol Microbiol. 2024 Jun;74(6). doi: 10.1099/ijsem.0.006412.

Abstract

Reductive soil disinfestation (RSD), also known as biological soil disinfestation, is a bioremediation method used to suppress soil-borne plant pathogens by stimulating the activity of indigenous anaerobic bacteria in the soil. An anaerobic bacterial strain (E14) was isolated from an anoxic soil sample subjected to RSD treatment and then comprehensively characterized. Cells of the strain were Gram-stain-positive, curved to sigmoid, and spore-forming rods. Cells were motile with a polar flagellum. Strain E14 grew in peptone-yeast extract broth, indicating that it utilized proteinous compounds. Strain E14 was also saccharolytic and produced acetate, isobutyrate, butyrate, isovalerate and gases (H and CO) as fermentation products. The strain did not decompose any of examined polysaccharides except for starch. The major cellular fatty acids of strain E14 were iso-C and iso-C DMA. The closest relative to strain E14, based on 16S rRNA gene sequences, was SYSU GA15002 (96.2 %) in the . Whole-genome analysis of strain E14 showed that its genome was 4.66 Mb long with a genomic DNA G+C content of 32.5 mol%. The average nucleotide identity (ANIb) between strain E14 and SYSU GA15002 was 69.0 %. The presence of the genes encoding glycolysis and butyrate production via the acetyl-CoA pathway was confirmed through genome analysis. Based on the obtained phylogenetic, genomic and phenotypic data, we propose that strain E14 should be assigned to the genus in the family as sp. nov. The type strain is E14 (=NBRC 115133=DSM 114974).

摘要

还原土消毒(RSD),又称生物土壤消毒,是一种通过刺激土壤中土著厌氧菌的活性来抑制土壤传播植物病原体的生物修复方法。从经过 RSD 处理的缺氧土壤样本中分离出一株厌氧细菌(E14),并对其进行了全面表征。该菌株的细胞革兰氏阳性,呈弯曲的正弦形,且能形成孢子。细胞通过极生鞭毛运动。菌株 E14 在蛋白胨酵母提取物肉汤中生长,表明它利用蛋白质化合物。菌株 E14 还具有糖化能力,并产生乙酸、异丁酸盐、丁酸盐、异戊酸盐和气体(H 和 CO)作为发酵产物。该菌株除淀粉外,不能分解任何所检查的多糖。菌株 E14 的主要细胞脂肪酸为 iso-C 和 iso-C DMA。根据 16S rRNA 基因序列,菌株 E14 与 SYSU GA15002 (96.2%)最为接近,属于. 菌株 E14 的全基因组分析表明,其基因组长 4.66 Mb,基因组 DNA G+C 含量为 32.5 mol%。菌株 E14 和 SYSU GA15002 之间的平均核苷酸同一性(ANIb)为 69.0%。通过基因组分析证实了糖酵解和通过乙酰辅酶 A 途径产生丁酸的基因的存在。基于获得的系统发育、基因组和表型数据,我们建议将菌株 E14 分配到 属中,作为. 模式菌株是 E14(=NBRC 115133=DSM 114974)。

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