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胶粒聚集使基于细胞的新冠病毒抗病毒筛选复杂化。

Colloidal Aggregation Confounds Cell-Based Covid-19 Antiviral Screens.

机构信息

Department of Pharmaceutical Chemistry, University of California San Francisco (UCSF), San Francisco, California 94143, United States.

Gladstone Institutes, San Francisco, California 94158, United States.

出版信息

J Med Chem. 2024 Jun 27;67(12):10263-10274. doi: 10.1021/acs.jmedchem.4c00597. Epub 2024 Jun 12.

Abstract

Colloidal aggregation is one of the largest contributors to false positives in early drug discovery. Here, we consider aggregation's role in cell-based infectivity assays in Covid-19 drug repurposing. We investigated the potential aggregation of 41 drug candidates reported as SARs-CoV-2 entry inhibitors. Of these, 17 formed colloidal particles by dynamic light scattering and exhibited detergent-dependent enzyme inhibition. To evaluate the impact of aggregation on antiviral efficacy in cells, we presaturated the colloidal drug suspensions with BSA or spun them down by centrifugation and measured the effects on spike pseudovirus infectivity. Antiviral potencies diminished by at least 10-fold following both BSA and centrifugation treatments, supporting a colloid-based mechanism. Aggregates induced puncta of the labeled spike protein in fluorescence microscopy, consistent with sequestration of the protein on the colloidal particles. These observations suggest that colloidal aggregation is common among cell-based antiviral drug repurposing and offers rapid counter-screens to detect and eliminate these artifacts.

摘要

胶态聚集是早期药物发现中导致假阳性的最大因素之一。在这里,我们考虑了聚集在新冠病毒药物再利用中的基于细胞的感染性测定中的作用。我们研究了 41 种被报道为 SARS-CoV-2 进入抑制剂的候选药物的潜在聚集情况。其中,17 种通过动态光散射形成胶体颗粒,并表现出去污剂依赖性的酶抑制作用。为了评估聚集对细胞中抗病毒功效的影响,我们用 BSA 预饱和胶体药物悬浮液,或通过离心将其沉淀下来,并测量对刺突假病毒感染性的影响。BSA 和离心处理后,抗病毒效力至少降低了 10 倍,支持胶体基机制。荧光显微镜下观察到聚集物诱导标记的刺突蛋白的斑点,这与该蛋白在胶体颗粒上的隔离一致。这些观察结果表明,胶体聚集在基于细胞的抗病毒药物再利用中很常见,并提供了快速的反向筛选来检测和消除这些假象。

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