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令人惊讶的是,最强的蛋白质结合物却很不稳定。

The strongest protein binder is surprisingly labile.

机构信息

Center for Cooperative Research in Biosciences (CIC bioGUNE), Basque Research and Technology Alliance (BRTA), Derio, Bizkaia, Spain.

Center for Cooperative Research in Biomaterials (CIC biomaGUNE), Basque Research and Technology Alliance (BRTA), Donostia-San Sebastián, Spain.

出版信息

Protein Sci. 2024 Jul;33(7):e5030. doi: 10.1002/pro.5030.

DOI:10.1002/pro.5030
PMID:38864696
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11168069/
Abstract

Bacterial adhesins are cell-surface proteins that anchor to the cell wall of the host. The first stage of infection involves the specific attachment to fibrinogen (Fg), a protein found in human blood. This attachment allows bacteria to colonize tissues causing diseases such as endocarditis. The study of this family of proteins is hence essential to develop new strategies to fight bacterial infections. In the case of the Gram-positive bacterium Staphylococcus aureus, there exists a class of adhesins known as microbial surface components recognizing adhesive matrix molecules (MSCRAMMs). Here, we focus on one of them, the clumping factor A (ClfA), which has been found to bind Fg through the dock-lock-latch mechanism. Interestingly, it has recently been discovered that MSCRAMM proteins employ a catch-bond to withstand forces exceeding 2 nN, making this type of interaction as mechanically strong as a covalent bond. However, it is not known whether this strength is an evolved feature characteristic of the bacterial protein or is typical only of the interaction with its partner. Here, we combine single-molecule force spectroscopy, biophysical binding assays, and molecular simulations to study the intrinsic mechanical strength of ClfA. We find that despite the extremely high forces required to break its interactions with Fg, ClfA is not by itself particularly strong. Integrating the results from both theory and experiments we dissect contributions to the mechanical stability of this protein.

摘要

细菌黏附素是一种细胞表面蛋白,可与宿主细胞壁结合。感染的第一阶段涉及到与纤维蛋白原(Fg)的特异性附着,纤维蛋白原是人类血液中的一种蛋白质。这种附着使细菌能够在组织中定植,引起如心内膜炎等疾病。因此,研究这些蛋白质家族对于开发新的抗菌感染策略至关重要。在革兰氏阳性菌金黄色葡萄球菌中,存在一类称为微生物表面成分识别黏附基质分子(MSCRAMM)的黏附素。在这里,我们关注其中一种,即凝聚因子 A(ClfA),它已被发现通过码头锁定闩锁机制与 Fg 结合。有趣的是,最近发现 MSCRAMM 蛋白采用捕获键来承受超过 2 nN 的力,使这种相互作用在机械强度上与共价键一样强。然而,目前尚不清楚这种强度是细菌蛋白的进化特征,还是仅与它的伴侣的相互作用典型。在这里,我们结合单分子力谱、生物物理结合测定和分子模拟来研究 ClfA 的固有机械强度。我们发现,尽管打破其与 Fg 相互作用所需的力极高,但 ClfA 本身并不是特别强。我们综合理论和实验结果,剖析了这种蛋白质机械稳定性的贡献。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d5a9/11168069/c54b58dbe864/PRO-33-e5030-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d5a9/11168069/532475600fff/PRO-33-e5030-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d5a9/11168069/d80077ae91af/PRO-33-e5030-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d5a9/11168069/0aee28c20f26/PRO-33-e5030-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d5a9/11168069/b4b9ee4d8493/PRO-33-e5030-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d5a9/11168069/c54b58dbe864/PRO-33-e5030-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d5a9/11168069/532475600fff/PRO-33-e5030-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d5a9/11168069/d80077ae91af/PRO-33-e5030-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d5a9/11168069/0aee28c20f26/PRO-33-e5030-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d5a9/11168069/b4b9ee4d8493/PRO-33-e5030-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d5a9/11168069/c54b58dbe864/PRO-33-e5030-g001.jpg

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本文引用的文献

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Bacterial Antibiotic Resistance: The Most Critical Pathogens.细菌抗生素耐药性:最关键的病原体。
Pathogens. 2021 Oct 12;10(10):1310. doi: 10.3390/pathogens10101310.
2
Force-clamp spectroscopy identifies a catch bond mechanism in a Gram-positive pathogen.力钳光谱法鉴定一种革兰氏阳性病原体中的牵张键机制。
Nat Commun. 2020 Oct 27;11(1):5431. doi: 10.1038/s41467-020-19216-8.
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Infective Endocarditis: A Contemporary Review.感染性心内膜炎:当代综述。
Mayo Clin Proc. 2020 May;95(5):982-997. doi: 10.1016/j.mayocp.2019.12.008. Epub 2020 Apr 13.
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Streptavidin/biotin: Tethering geometry defines unbinding mechanics.链霉亲和素/生物素:连接几何形状决定解缚力学。
Sci Adv. 2020 Mar 25;6(13):eaay5999. doi: 10.1126/sciadv.aay5999. eCollection 2020 Mar.
5
The MSCRAMM Family of Cell-Wall-Anchored Surface Proteins of Gram-Positive Cocci.革兰阳性球菌细胞壁锚定表面蛋白家族 MSCRAMM。
Trends Microbiol. 2019 Nov;27(11):927-941. doi: 10.1016/j.tim.2019.06.007. Epub 2019 Jul 30.
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Calcium stabilizes the strongest protein fold.钙稳定了最强的蛋白质折叠。
Nat Commun. 2018 Nov 12;9(1):4764. doi: 10.1038/s41467-018-07145-6.
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Direction Matters: Monovalent Streptavidin/Biotin Complex under Load.方向很重要:负载下的单价链霉亲和素/生物素复合物
Nano Lett. 2019 Jun 12;19(6):3415-3421. doi: 10.1021/acs.nanolett.8b04045. Epub 2018 Oct 26.
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Mechanical architecture and folding of E. coli type 1 pilus domains.大肠杆菌 I 型菌毛结构域的机械结构和折叠。
Nat Commun. 2018 Jul 16;9(1):2758. doi: 10.1038/s41467-018-05107-6.
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Mechanomicrobiology: How Mechanical Forces Activate Staphylococcus aureus Adhesion.力学微生物学:机械力如何激活金黄色葡萄球菌黏附。
Trends Microbiol. 2018 Aug;26(8):645-648. doi: 10.1016/j.tim.2018.05.004. Epub 2018 Jun 1.
10
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Proc Natl Acad Sci U S A. 2018 May 22;115(21):5564-5569. doi: 10.1073/pnas.1718104115. Epub 2018 May 7.