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Metabolite profiling of human-originated Lachnospiraceae at the strain level.

作者信息

Abdugheni Rashidin, Wang Wen-Zhao, Wang Yu-Jing, Du Meng-Xuan, Liu Feng-Lan, Zhou Nan, Jiang Cheng-Ying, Wang Chang-Yu, Wu Linhuan, Ma Juncai, Liu Chang, Liu Shuang-Jiang

机构信息

State Key Laboratory of Microbial Resources, Environmental Microbiology Research Center (EMRC) Institute of Microbiology, Chinese Academy of Sciences Beijing China.

State Key Laboratory of Desert and Oasis Ecology Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences Urumqi China.

出版信息

Imeta. 2022 Oct 13;1(4):e58. doi: 10.1002/imt2.58. eCollection 2022 Dec.


DOI:10.1002/imt2.58
PMID:38867908
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10989990/
Abstract

The human gastrointestinal (GI) tract harbors diverse microbes, and the family Lachnospiraceae is one of the most abundant and widely occurring bacterial groups in the human GI tract. Beneficial and adverse effects of the Lachnospiraceae on host health were reported, but the diversities at species/strain levels as well as their metabolites of Lachnospiraceae have been, so far, not well documented. In the present study, we report on the collection of 77 uman-originated anospiraceae ecies (please refer hLchsp, https://hgmb.nmdc.cn/subject/lachnospiraceae) and the in vitro metabolite profiles of 110 Lachnospiraceae strains (https://hgmb.nmdc.cn/subject/lachnospiraceae/metabolites). The Lachnospiraceae strains in hLchsp produced 242 metabolites of 17 categories. The larger categories were alcohols (89), ketones (35), pyrazines (29), short (C2-C5), and long (C > 5) chain acids (31), phenols (14), aldehydes (14), and other 30 compounds. Among them, 22 metabolites were aromatic compounds. The well-known beneficial gut microbial metabolite, butyric acid, was generally produced by many Lachnospiraceae strains, and strain Lach-101 and strain NSJ-173 were the top 2 butyric acid producers, as 331.5 and 310.9 mg/L of butyric acids were produced in vitro, respectively. Further analysis of the publicly available cohort-based volatile-metabolomic data sets of human feces revealed that over 30% of the prevailing volatile metabolites were covered by Lachnospiraceae metabolites identified in this study. This study provides Lachnospiraceae strain resources together with their metabolic profiles for future studies on host-microbe interactions and developments of novel probiotics or biotherapies.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a2a/10989990/ed553dfaa80f/IMT2-1-e58-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a2a/10989990/e36cd69d938a/IMT2-1-e58-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a2a/10989990/b9fa318800dd/IMT2-1-e58-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a2a/10989990/687b9789e343/IMT2-1-e58-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a2a/10989990/31370265c4a4/IMT2-1-e58-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a2a/10989990/1bafaca75a92/IMT2-1-e58-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a2a/10989990/6f796c88d366/IMT2-1-e58-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a2a/10989990/ed553dfaa80f/IMT2-1-e58-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a2a/10989990/e36cd69d938a/IMT2-1-e58-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a2a/10989990/b9fa318800dd/IMT2-1-e58-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a2a/10989990/687b9789e343/IMT2-1-e58-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a2a/10989990/31370265c4a4/IMT2-1-e58-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a2a/10989990/1bafaca75a92/IMT2-1-e58-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a2a/10989990/6f796c88d366/IMT2-1-e58-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a2a/10989990/ed553dfaa80f/IMT2-1-e58-g008.jpg

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本文引用的文献

[1]
The monkey microbial biobank brings previously uncultivated bioresources for nonhuman primate and human gut microbiomes.

mLife. 2022-5-24

[2]
Automated analysis of genomic sequences facilitates high-throughput and comprehensive description of bacteria.

ISME Commun. 2021-5-20

[3]
Oral administration of Blautia wexlerae ameliorates obesity and type 2 diabetes via metabolic remodeling of the gut microbiota.

Nat Commun. 2022-8-18

[4]
Butyrate-producing Eubacterium rectale suppresses lymphomagenesis by alleviating the TNF-induced TLR4/MyD88/NF-κB axis.

Cell Host Microbe. 2022-8-10

[5]
Roseburia hominis Alleviates Neuroinflammation via Short-Chain Fatty Acids through Histone Deacetylase Inhibition.

Mol Nutr Food Res. 2022-9

[6]
gen. nov., sp. nov. isolated from human faeces.

Int J Syst Evol Microbiol. 2022-5

[7]
Increases Intestinal Melatonin Level by Activating p-CREB-AANAT Pathway.

Nutrients. 2021-12-28

[8]
Biostimulation of Bacteria in Liquid Culture for Identification of New Antimicrobial Compounds.

Pharmaceuticals (Basel). 2021-11-27

[9]
and integration into the gut microbiome at key time points in early life are linked to infant neurodevelopment.

Gut Microbes. 2021

[10]
Antifungal mechanism of 1-nonanol against Aspergillus flavus growth revealed by metabolomic analyses.

Appl Microbiol Biotechnol. 2021-10

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