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通过原子成像和衍射分析揭示的球霰石堆积结构

Stacking Structure of Vaterite Revealed by Atomic Imaging and Diffraction Analysis.

作者信息

Okumura Taiga, Takahashi Gen, Suzuki Michio, Kogure Toshihiro

机构信息

Department of Earth and Planetary Science, Graduate School of Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-0033, Japan.

Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo, 113-8657, Japan.

出版信息

Chemistry. 2024 Sep 16;30(52):e202401557. doi: 10.1002/chem.202401557. Epub 2024 Jul 26.

DOI:10.1002/chem.202401557
PMID:38868960
Abstract

Anhydrous calcium carbonate crystals exist as three polymorphs: calcite, aragonite, and vaterite. Although vaterite is a metastable phase rarely found in the geological environment, it is intriguing that various biominerals are composed of vaterite. The processes of stable vaterite formation in biological systems cannot be understood without elucidating the nature of vaterite. The crystal structure of vaterite has been discussed for nearly a century but is still an open question. Here we propose the actual structure of vaterite by combining atomic imaging and diffraction analysis with simulations of disordered stacking sequences. Vaterite basically appears as layers of hexagonal calcium planes and carbonate (CO )-containing sheets stacked with +60°, -60°, or 180° rotations from the underlying layer. However, equivalent carbonate positions in alternating layers are forbidden, and four-layer stacking in which the fourth layer rotates 180° relative to the first layer are predominant, forming an orthogonal reciprocal lattice in diffraction patterns. These stacking characteristics replicate the intensity distribution in the electron and X-ray diffraction patterns. This study has almost completely elucidated the crystal structure and stacking sequence of vaterite. Our findings provide insights into the thermodynamic stability of vaterite, which facilitates comprehension of the biomineralization processes and growth dynamics of calcium carbonate.

摘要

无水碳酸钙晶体以三种多晶型形式存在

方解石、文石和球霰石。尽管球霰石是一种在地质环境中很少见的亚稳相,但令人感兴趣的是,各种生物矿物都是由球霰石构成的。如果不阐明球霰石的本质,就无法理解生物系统中稳定的球霰石形成过程。球霰石的晶体结构已经讨论了近一个世纪,但仍然是一个悬而未决的问题。在这里,我们通过将原子成像和衍射分析与无序堆积序列模拟相结合,提出了球霰石的实际结构。球霰石基本上表现为六边形钙平面层和含碳酸根(CO₃²⁻)的片层,它们相对于下层以 +60°、 -60° 或 180° 的旋转角度堆叠。然而,交替层中的等效碳酸根位置是被禁止的,并且第四层相对于第一层旋转 180° 的四层堆叠占主导地位,在衍射图案中形成正交倒易晶格。这些堆叠特征再现了电子和 X 射线衍射图案中的强度分布。这项研究几乎完全阐明了球霰石的晶体结构和堆叠序列。我们的发现为球霰石的热力学稳定性提供了见解,这有助于理解碳酸钙的生物矿化过程和生长动力学。

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Stacking Structure of Vaterite Revealed by Atomic Imaging and Diffraction Analysis.通过原子成像和衍射分析揭示的球霰石堆积结构
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