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利用元动力学模拟揭示球霰石从无定形碳酸钙的形成途径。

Unveiling the Formation Pathway of Vaterite from Amorphous Calcium Carbonate Using Metadynamics Simulations.

作者信息

Saito Takumi, Maruyama Ippei, Suda Yuya, Teramoto Atsushi, Kitagaki Ryoma, Ohkubo Takahiro

机构信息

Graduate School of Engineering, Chiba University, 1-33 Yayoi-cho Inage-ku, Chiba 263-8522, Japan.

Department of Architecture, Graduate School of Engineering, The University of Tokyo, Tokyo 113-8656, Japan.

出版信息

ACS Omega. 2025 Apr 23;10(17):17948-17959. doi: 10.1021/acsomega.5c01115. eCollection 2025 May 6.

Abstract

Calcium carbonate is a compound that is widely distributed throughout the Earth as a natural mineral and a material produced by biological activities. The crystal structure of calcium carbonate has three polymorphs: the most thermodynamically stable calcite, followed by aragonite and vaterite. Of the three crystalline phases, the formation process and structure of the most unstable, vaterite, remain mysterious. In this study, the pathway for forming the vaterite crystal structure from amorphous CaCO (ACC) is reproduced using well-tempered metadynamics molecular dynamics simulations. The structures sampled at multiple minima on the energy landscape are refined through first-principles calculations based on density functional theory. The sampled structures are assigned space groups and classified as calcite- and vaterite-like structures according to the arrangement of CO and Ca sheets. The initial crystal structure produced from ACC is a monoclinic crystal with Ca sheets and CO lying in the interlayer; however, it does not exhibit the 3-fold symmetry of calcite. Calcite structures with 3-fold symmetry, or orthorhombic crystals with rotated CO units, as found in vaterite, can be derived from this structure. The orthorhombic structure then transitions to the more stable monoclinic form, which is likely vaterite. The understanding of phase transitions based on the diverse crystal structures of calcium carbonate revealed in this study provides a predictive view of biomineralization and carbonation reactions of cementitious materials.

摘要

碳酸钙是一种作为天然矿物和生物活动产生的物质广泛分布于地球的化合物。碳酸钙的晶体结构有三种多晶型物:热力学上最稳定的方解石,其次是文石和球霰石。在这三种晶相中,最不稳定的球霰石的形成过程和结构仍然是个谜。在本研究中,使用温态元动力学分子动力学模拟重现了从无定形碳酸钙(ACC)形成球霰石晶体结构的途径。通过基于密度泛函理论的第一性原理计算对在能量景观上多个极小值处采样的结构进行了优化。根据CO 和Ca层的排列,将采样结构指定为空间群,并分类为方解石状和球霰石状结构。由ACC产生的初始晶体结构是一种单斜晶体,Ca层和CO 位于层间;然而,它不具有方解石的三重对称性。具有三重对称性的方解石结构,或如球霰石中发现的具有旋转CO 单元的正交晶体,可以从该结构推导出来。正交结构然后转变为更稳定的单斜形式,这可能是球霰石。本研究中基于碳酸钙多样晶体结构揭示的相变理解为胶凝材料的生物矿化和碳酸化反应提供了一个预测视角。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c7e5/12059904/7438a9100dd5/ao5c01115_0001.jpg

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