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建议将种重新分类为 ,并将属转移到 科。

Proposal for reclassification of the species as nom. nov. and transfer of the genus to the family .

机构信息

Wilmar International Limited, WIL@NUS Corporate Laboratory, Centre for Translational Medicine, National University of Singapore, Singapore, Singapore.

出版信息

Int J Syst Evol Microbiol. 2024 Jun;74(6). doi: 10.1099/ijsem.0.006417.

Abstract

X5-1 is an anaerobic, xylan-fermenting bacterium first isolated from methane-producing cattle manure. Initially identified as , this species was later reclassified as in 2019. Although this reclassification found support through Genome blast Distance Phylogeny analysis which placed X5-1 into the same clade as DSM 24995, it was contradicted by 16S rRNA gene phylogenetic analysis, which associated it with a set of misnamed species later reassigned into the genus . To ascertain its taxonomic position, comparative analyses were performed to re-examine the relationship between X5-1 and all species of the genera and . The ranges of 16S rRNA gene sequence similarity, average amino acid identity, and percentage of conserved protein prediction values were higher between X5-1 and species of the genus than . In addition, X5-1 was found to harbour genes and pathways conserved and exclusive to species within the genus but not . Essentially, in both the 16S rRNA gene phylogenetic tree and the core-genome phylogenomic tree, X5-1 clustered into the same clade as species of the genus , distinct from species of the genus . It is thus clear that X5-1 represents a species within the genus , which we propose to reclassify as nom. nov. Finally, based on the results from the phylogenetic and comparative analyses, the genus was transferred to the family .

摘要

X5-1 是一种厌氧的木聚糖发酵细菌,最初从产甲烷牛粪中分离得到。最初被鉴定为 ,该物种后来在 2019 年被重新归类为 。尽管通过基因组比对距离系统发育分析发现这一重新分类将 X5-1 归入与 DSM 24995 相同的进化枝中得到了支持,但 16S rRNA 基因系统发育分析却与之相矛盾,该分析将其与一组命名错误的 物种联系在一起,后来被重新归入 属。为了确定其分类地位,进行了比较分析,以重新检查 X5-1 与属内所有种之间的关系 和. 16S rRNA 基因序列相似性、平均氨基酸同一性和保守蛋白预测值的范围在 X5-1 与属内的种之间比 更高。此外,发现 X5-1 具有与属内的种保守和特有的基因和途径,但与属内的种没有 。基本上,在 16S rRNA 基因系统发育树和核心基因组系统发育树中,X5-1 与属内的种聚集成相同的进化枝,与属内的种明显不同。因此,很明显,X5-1 代表属内的一个种,我们建议将其重新归类为 nom. nov. 最后,基于系统发育和比较分析的结果,将 属转移到了.

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