BGI-Shenzhen, Shenzhen 518083, China; Laboratory of Genomics and Molecular Biomedicine, Department of Biology, University of Copenhagen, Universitetsparken 13, 2100 Copenhagen, Denmark; Shenzhen Engineering Laboratory of Detection and Intervention of Human Intestinal Microbiome, BGI-Shenzhen, Shenzhen, China; Qingdao-Europe Advanced Institute for Life Sciences, BGI-Shenzhen, Qingdao 266555, China.
BGI-Shenzhen, Shenzhen 518083, China.
Syst Appl Microbiol. 2021 May;44(3):126201. doi: 10.1016/j.syapm.2021.126201. Epub 2021 Mar 30.
A novel, non-motile, Gram-stain-positive, non-spore-forming, obligate anaerobic bacterium, designated strain TF01-11, was isolated from human faeces. The isolate was characterized by phylogenetic and phenotypic properties, as well as by determination of its whole genome sequence. The growth temperature and pH ranges were 30-42 °C and 6.0-8.5, respectively. The end products of glucose fermentation were butyric acid and a small amount of acetic acid. The genome was estimated to be 3.61 Mbp with G + C content of 36.8 mol%. Genes related to biosynthesis of diaminopimelic acid, polar lipids, polyamines, teichoic and lipoteichoic acids were present. The predominant fatty acids were C (37.9%), C (16.4%), C OH/iso-CH (11.1%) and Cω9c (10.6%). Phylogenetic analyses based on 16S rRNA gene sequences demonstrated that the isolate was a member of family Lachnospiraceae, with the highest sequence similarity to the type strain of Roseburia intestinalis DSM 14610 (92.2%), followed by Acetivibrio ethanolgignens ATCC 33324 (92.0%). The average nucleotide identity (ANI) and average amino acid identity (AAI) values between strain TF01-11 and these closest relatives were less than 70.5% and 52.3%. Based on results of phenotypic characteristics and genotypic properties presented in this study, strain TF01-11 represents a novel species in a new genus, for which the name Butyribacter intestini gen. nov., sp. nov. is proposed. The type strain of the type species is TF01-11 (CGMCC 1.5203 = DSM 105140). In addition, Acetivibrio ethanolgignens is proposed to be reclassified as Acetanaerobacter ethanolgignens gen. nov., comb. nov.
一株新型、非运动性、革兰氏阳性、非孢子形成、专性厌氧细菌,被命名为 TF01-11 菌株,从人体粪便中分离得到。该分离株的特征是通过系统发育和表型特性以及全基因组序列的测定来确定的。生长温度和 pH 值范围分别为 30-42°C 和 6.0-8.5。葡萄糖发酵的终产物为丁酸和少量乙酸。基因组估计为 3.61 Mbp,G+C 含量为 36.8 mol%。存在与二氨基庚二酸、极性脂类、多胺、磷壁酸和脂磷壁酸生物合成相关的基因。优势脂肪酸为 C(37.9%)、C(16.4%)、C OH/iso-CH(11.1%)和 Cω9c(10.6%)。基于 16S rRNA 基因序列的系统发育分析表明,该分离株是 Lachnospiraceae 家族的成员,与 Roseburia intestinalis DSM 14610 型菌株的序列相似度最高(92.2%),其次是 Acetivibrio ethanolgignens ATCC 33324(92.0%)。菌株 TF01-11 与这些最接近的亲缘关系之间的平均核苷酸同一性(ANI)和平均氨基酸同一性(AAI)值均小于 70.5%和 52.3%。基于本研究中呈现的表型特征和基因型特性的结果,菌株 TF01-11 代表一个新属中的一个新型物种,建议将其命名为 Butyribacter intestini gen. nov.,sp. nov.。模式种的模式菌株为 TF01-11(CGMCC 1.5203=DSM 105140)。此外,建议将 Acetivibrio ethanolgignens 重新分类为 Acetanaerobacter ethanolgignens gen. nov.,comb. nov.