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16个法国牛品种妊娠期长度的遗传参数、全基因组关联研究及选择前景

Genetic parameters, GWAS and selection perspective on gestation length in 16 French cattle breeds.

作者信息

Jourdain Jeanlin, Capitan Aurélien, Saintilan Romain, Hozé Chris, Fouéré Corentin, Fritz Sébastien, Boichard Didier, Barbat Anne

机构信息

Eliance, 149 Rue de Bercy, 75012 Paris, France; Université Paris-Saclay, INRAE, AgroParisTech, GABI, G2B, 78350 Jouy-en-Josas, France.

Université Paris-Saclay, INRAE, AgroParisTech, GABI, G2B, 78350 Jouy-en-Josas, France.

出版信息

J Dairy Sci. 2024 Jun 12. doi: 10.3168/jds.2024-24736.

Abstract

In this paper, we present a comprehensive study of gestation length (GL) in 16 cattle breeds by using large genotype and animal record databases. Data included over 20 million gestations since 2000 and genotypes from one million calves. The study addressed the GL variability within and between breeds, estimation of its direct and maternal heritability coefficients, association with fitness and several economic traits, and QTL detection. The breed average GL varied from 279.7 to 294.4 d, in Holstein and Blonde d'Aquitaine breeds, respectively. Standard deviations per breed were similar and ranged from 5.2 to 5.8 d. Direct heritability (i.e., for GL defined as a trait of the calf) was moderate to high (h = 0.40 to 0.67), whereas the maternal heritability was low (0.04 to 0.06). Extreme breeding values for GL were strongly associated with a higher mortality during the first 2 d of life and were associated with milk production of dams for dairy breeds and precocity of females. Finally, several QTL were detected affecting GL with cumulated effects up to a few days, and at least 2 QTL were found to be shared between different breeds. Our study highlights the risks that would be associated with selection toward a reduced gestation length. Further genomic studies are needed to identify the causal variants, and their association with juvenile mortality and other economic traits.

摘要

在本文中,我们利用大型基因型和动物记录数据库,对16个牛品种的妊娠期长度(GL)进行了全面研究。数据包括自2000年以来的2000多万次妊娠以及100万头犊牛的基因型。该研究探讨了品种内和品种间的GL变异性、其直接和母体遗传力系数的估计、与健康和几个经济性状的关联以及QTL检测。品种平均GL在荷斯坦和阿基坦棕牛品种中分别从279.7天到294.4天不等。每个品种的标准差相似,范围从5.2天到5.8天。直接遗传力(即,将GL定义为犊牛的一个性状)为中度到高度(h = 0.40至0.67),而母体遗传力较低(0.04至0.06)。GL的极端育种值与出生后前两天的较高死亡率密切相关,并且与奶牛品种的母畜产奶量以及雌性早熟有关。最后,检测到几个影响GL的QTL,其累积效应可达几天,并且发现至少2个QTL在不同品种之间共享。我们的研究强调了选择缩短妊娠期长度可能带来的风险。需要进一步的基因组研究来确定因果变异及其与幼年死亡率和其他经济性状的关联。

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