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16 个法国牛种的妊娠期长度的遗传参数、全基因组关联研究和选择观点。

Genetic parameters, genome-wide association study, and selection perspective on gestation length in 16 French cattle breeds.

机构信息

Eliance, 75012 Paris, France; Université Paris-Saclay, INRAE, AgroParisTech, GABI, 78350 Jouy-en-Josas, France.

Université Paris-Saclay, INRAE, AgroParisTech, GABI, 78350 Jouy-en-Josas, France.

出版信息

J Dairy Sci. 2024 Oct;107(10):8157-8169. doi: 10.3168/jds.2023-24632. Epub 2024 Jul 14.

DOI:10.3168/jds.2023-24632
PMID:39004135
Abstract

In this paper, we present a comprehensive study of gestation length (GL) in 16 cattle breeds by using large genotype and animal record databases. Data included over 20 million gestations since 2000 and genotypes from one million calves. The study addressed the GL variability within and between breeds, estimation of its direct and maternal heritability coefficients, association with fitness and several economic traits, and QTL detection. The breed average GL varied from 279.7 to 294.4 d in Holstein and Blonde d'Aquitaine breeds, respectively. Standard deviations per breed were similar and ranged from 5.2 to 5.8 d. Direct heritability (i.e., for GL defined as a trait of the calf) was moderate to high (h = 0.40-0.67), whereas the maternal heritability was low (0.04-0.06). Extreme breeding values for GL were strongly associated with a higher mortality during the first 2 d of life and were associated with milk production of dams for dairy breeds and precocity of females. Finally, several QTL were detected affecting GL with cumulated effects up to a few days, and at least 2 QTL were found to be shared between different breeds. Our study highlights the risks that would be associated with selection toward a reduced GL. Further genomic studies are needed to identify the causal variants and their association with juvenile mortality and other economic traits.

摘要

本文通过使用大型基因型和动物记录数据库,对 16 个牛品种的妊娠期长度(GL)进行了全面研究。数据包括自 2000 年以来超过 2000 万个妊娠期和 100 万头小牛的基因型。该研究探讨了 GL 在品种内和品种间的变异性、直接和母体遗传力系数的估计、与适应性和几个经济性状的关联以及 QTL 检测。荷斯坦牛和 Blonde d'Aquitaine 品种的平均 GL 分别为 279.7 至 294.4 天。每个品种的标准差相似,范围为 5.2 至 5.8 天。直接遗传力(即,将 GL 定义为小牛的特征)为中等至高度(h = 0.40-0.67),而母体遗传力较低(0.04-0.06)。GL 的极端育种值与生命头两天的死亡率较高密切相关,与奶牛品种的母马产奶量和雌性早熟性相关。最后,检测到几个影响 GL 的 QTL,累积效应可达几天,并且至少有 2 个 QTL 在不同品种之间共享。我们的研究强调了与选择缩短 GL 相关的风险。需要进一步的基因组研究来确定因果变异及其与青少年死亡率和其他经济性状的关联。

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