Michenet Alexis, Saintilan Romain, Venot Eric, Phocas Florence
GABI, INRA, AgroParisTech, Université Paris-Saclay, 78350, Jouy-en-Josas, France.
AURIVA, Les Nauzes, 81580, Soual, France.
Genet Sel Evol. 2016 Jun 22;48(1):45. doi: 10.1186/s12711-016-0223-z.
In beef cattle, maternal care is critical for calf survival and growth. Our objective was to evaluate the major sources of additive genetic variation in maternal behavior and suckling performance in two genetically close beef breeds.
Maternal performance was assessed based on maternal behavior (MB), milk yield (MY) and udder swelling score (US) of 1236 Blonde d'Aquitaine cows and 1048 Limousin cows. MB was scored just after calving to describe the intensity of the dam's protective behavior towards her calf. Most of the cows were genotyped using the low-density chip EuroG10K BeadChip, and imputed to the high-density 770K panel within breed. Genetic parameters for each trait were estimated for each breed under a multi-trait best linear unbiased prediction animal model. Genomic analysis was performed for each breed using the high-density genotypes and a Bayesian variable selection method.
Heritabilities were low for MB (0.11-0.13), intermediate for MY (0.33-0.45) and high for US (0.47-0.64). Genetic correlations between the traits ranged from 0.31 to 0.58 and 0.72 to 0.99 for the Blonde d'Aquitaine and Limousin breeds, respectively. Two quantitative trait loci (QTL) were detected for MB in Blonde d'Aquitaine with NPY1R and ADRA2A as candidate causative genes. Thirty to 56 QTL were detected for MY and US in both breeds and 12 candidate genes were identified as having a role in the genetic variation of suckling performance. Since very few pleiotropic QTL were detected, there was little biological explanation for the moderate (0.57) to very high (0.99) genetic correlations estimated between MY and US in the Blonde d'Aquitaine and Limousin cows, respectively. In Blonde d'Aquitaine, the correlation was largely due to the pleiotropic QTL detected in the region upstream of the CG gene, while in Limousin, this region was only identified for US, thus attesting the difference in genetic architecture between the breeds.
Our findings question the assumption that two populations that have close genetic links share many QTL. Nevertheless, we identified four candidate genes that may explain a substantial amount of the genetic variation in suckling performance of these two breeds.
在肉牛中,母性行为对犊牛的存活和生长至关重要。我们的目标是评估两个遗传关系密切的肉牛品种在母性行为和哺乳性能方面加性遗传变异的主要来源。
基于1236头阿基坦黄牛和1048头利木赞牛的母性行为(MB)、产奶量(MY)和乳房肿胀评分(US)对母性表现进行评估。在产犊后立即对MB进行评分,以描述母牛对其犊牛的保护行为强度。大多数母牛使用低密度芯片EuroG10K BeadChip进行基因分型,并在品种内推算到高密度770K芯片。在多性状最佳线性无偏预测动物模型下,对每个品种的每个性状估计遗传参数。使用高密度基因型和贝叶斯变量选择方法对每个品种进行基因组分析。
MB的遗传力较低(0.11 - 0.13),MY中等(0.33 - 0.45),US较高(0.47 - 0.64)。阿基坦黄牛和利木赞牛品种中性状之间的遗传相关性分别为0.31至0.58和0.72至0.99。在阿基坦黄牛中检测到两个与MB相关的数量性状位点(QTL),NPY1R和ADRA2A作为候选致病基因。在两个品种中均检测到30至56个与MY和US相关的QTL,并鉴定出12个候选基因在哺乳性能的遗传变异中起作用。由于检测到的多效性QTL很少,因此对于阿基坦黄牛和利木赞牛中分别估计的MY和US之间中等(0.57)到非常高(0.99)的遗传相关性,几乎没有生物学上的解释。在阿基坦黄牛中,这种相关性很大程度上归因于在CG基因上游区域检测到多效性QTL,而在利木赞牛中,该区域仅在US中被鉴定出来,从而证明了两个品种之间遗传结构的差异。
我们的研究结果对两个遗传关系密切的群体共享许多QTL这一假设提出了质疑。尽管如此,我们鉴定出四个候选基因,它们可能解释了这两个品种在哺乳性能方面大量的遗传变异。