三聚体和四聚体阳离子型苯乙烯染料作为新型荧光和圆二色性探针用于双链 DNA 和双链 RNA。
Trimeric and Tetrameric Cationic Styryl Dyes as Novel Fluorescence and CD Probes for ds-DNA and ds-RNA.
机构信息
Division of Organic Chemistry & Biochemistry, Ruđer Bošković Institute, 10000 Zagreb, Croatia.
Department of Inorganic and Organic Chemistry and Biochemistry, Faculty of Pharmacy, Universidad de Castilla-La Mancha, C/José María Sánchez Ibáñez s/n, 02008 Albacete, Spain.
出版信息
Int J Mol Sci. 2024 May 24;25(11):5724. doi: 10.3390/ijms25115724.
The wide use of mono- or bis-styryl fluorophores in biomedical applications prompted the presented design and study of a series of trimeric and tetrameric homo-analogues, styryl moieties arranged around a central aromatic core. The interactions with the most common biorelevant targets, ds-DNA and ds-RNA, were studied by a set of spectrophotometric methods (UV-VIS, fluorescence, circular dichroism, thermal denaturation). All studied dyes showed strong light absorption in the 350-420 nm range and strongly Stokes-shifted (+100-160 nm) emission with quantum yields () up to 0.57, whereby the mentioned properties were finely tuned by the type of the terminal cationic substituent and number of styryl components (tetramers being red-shifted in respect to trimers). All studied dyes strongly interacted with ds-DNA and ds-RNA with 1-10 nM affinity, with dye emission being strongly quenched. The tetrameric analogues did not show any particular selectivity between ds-DNA or ds-RNA due to large size and consequent partial, non-selective insertion into DNA/RNA grooves. However, smaller trimeric styryl series showed size-dependent selective stabilization of ds-DNA vs. ds-RNA against thermal denaturation and highly selective or even specific recognition of several particular ds-DNA or ds-RNA structures by induced circular dichroism (ICD) bands. The chiral (ICD) selectivity was controlled by the size of a terminal cationic substituent. All dyes entered efficiently live human cells with negligible cytotoxic activity. Further prospects in the transfer of ICD-based selectivity into fluorescence-chiral methods (FDCD and CPL) is proposed, along with the development of new analogues with red-shifted absorbance properties.
单或双苯乙烯荧光团在生物医学应用中的广泛使用促使设计和研究了一系列三聚体和四聚体同系物,苯乙烯部分围绕着一个中心芳环排列。通过一组分光光度法(UV-VIS、荧光、圆二色性、热变性)研究了与最常见的生物相关靶标(ds-DNA 和 ds-RNA)的相互作用。所有研究的染料在 350-420nm 范围内表现出强吸收,并且具有强斯托克斯位移(+100-160nm)发射,量子产率()高达 0.57,其中通过末端阳离子取代基的类型和苯乙烯部分的数量(四聚体相对于三聚体红移)精细调节了这些特性。所有研究的染料与 ds-DNA 和 ds-RNA 强烈相互作用,亲和力为 1-10nM,染料发射强烈猝灭。由于尺寸较大,四聚体类似物在 ds-DNA 或 ds-RNA 之间没有表现出任何特别的选择性,导致部分非选择性地插入 DNA/RNA 沟槽。然而,较小的苯乙烯三聚物系列显示出对热变性的 ds-DNA 相对于 ds-RNA 的尺寸依赖性选择性稳定,并且通过诱导圆二色性(ICD)带对几种特定的 ds-DNA 或 ds-RNA 结构具有高度选择性甚至特异性识别。手性(ICD)选择性受末端阳离子取代基的尺寸控制。所有染料都有效地进入活的人类细胞,细胞毒性活性可忽略不计。提出了将基于 ICD 的选择性转移到荧光手性方法(FDCD 和 CPL)中的进一步前景,并开发了具有红移吸收特性的新型类似物。
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