酵母线粒体异亮氨酸tRNA和甲硫氨酸tRNAm：核苷酸序列及密码子识别模式。
Yeast mitochondrial tRNAIle and tRNAMetm: nucleotide sequence and codon recognition patterns.
作者信息
Sibler A P, Dirheimer G, Martin R P
出版信息
Nucleic Acids Res. 1985 Feb 25;13(4):1341-5. doi: 10.1093/nar/13.4.1341.
Abstract
The nucleotide sequence of yeast mitochondrial isoleucine- and methionine-elongator tRNA have been determined. Interestingly, long stretches of almost identical nucleotide sequences are found within these two tRNAs and also within the yeast mt tRNAMetf, suggesting that the 3 tRNAs may have arisen from a common ancestor. Both mt tRNAMetm and tRNAIle contain all the structural characteristics which are present in the standard cloverleaf, except that the mt tRNAMetm contains an extra unpaired nucleotide within the base-paired T psi C stem. This rather unusual feature may have an influence on the decoding properties of the C-A-U anticodon of mt tRNAMetm by conferring the ability to translate not only the codon A-U-G but also A-U-A.
摘要
已确定酵母线粒体异亮氨酸和甲硫氨酸延伸tRNA的核苷酸序列。有趣的是，在这两种tRNA以及酵母线粒体甲硫氨酸起始tRNA（mt tRNAMetf）中都发现了长段几乎相同的核苷酸序列，这表明这三种tRNA可能起源于一个共同的祖先。线粒体甲硫氨酸tRNA（mt tRNAMetm）和异亮氨酸tRNA（tRNAIle）都具备标准三叶草结构的所有结构特征，只是mt tRNAMetm在碱基配对的TψC茎内含有一个额外的未配对核苷酸。这一相当不寻常的特征可能会影响mt tRNAMetm中C - A - U反密码子的解码特性，使其不仅能够翻译密码子A - U - G，还能翻译A - U - A。
相似文献
1
Yeast mitochondrial tRNAIle and tRNAMetm: nucleotide sequence and codon recognition patterns.酵母线粒体异亮氨酸tRNA和甲硫氨酸tRNAm：核苷酸序列及密码子识别模式。
Nucleic Acids Res. 1985 Feb 25;13(4):1341-5. doi: 10.1093/nar/13.4.1341.
2
Codon recognition rules in yeast mitochondria.酵母线粒体中的密码子识别规则。
Proc Natl Acad Sci U S A. 1980 Jun;77(6):3167-70. doi: 10.1073/pnas.77.6.3167.
3
Novel features in the genetic code and codon reading patterns in Neurospora crassa mitochondria based on sequences of six mitochondrial tRNAs.基于六种线粒体tRNA序列的粗糙脉孢菌线粒体遗传密码和密码子阅读模式的新特征
Proc Natl Acad Sci U S A. 1980 Jun;77(6):3159-63. doi: 10.1073/pnas.77.6.3159.
4
The modified wobble base inosine in yeast tRNAIle is a positive determinant for aminoacylation by isoleucyl-tRNA synthetase.酵母异亮氨酰-tRNA中经过修饰的摆动碱基肌苷是异亮氨酰-tRNA合成酶进行氨酰化反应的一个正向决定因素。
Biochemistry. 1997 Jul 8;36(27):8269-75. doi: 10.1021/bi970206l.
5
Primary structure of AUA-specific isoleucine transfer ribonucleic acid from Escherichia coli.来自大肠杆菌的AUA特异性异亮氨酸转移核糖核酸的一级结构。
Biochemistry. 1980 May 13;19(10):2085-9. doi: 10.1021/bi00551a013.
6
Yeast mitochondrial tRNATrp can recognize the nonsense codon UGA.酵母线粒体色氨酸转运RNA能够识别无义密码子UGA。
Nature. 1980 Jun 19;285(5766):579-81. doi: 10.1038/285579a0.
7
Sequence of tRNA Ile IAU from brewer's yeast.来自酿酒酵母的异亮氨酸tRNA IAU的序列。
Biochem Biophys Res Commun. 1984 Mar 30;119(3):905-12. doi: 10.1016/0006-291x(84)90859-3.
8
Unconventional decoding of the AUA codon as methionine by mitochondrial tRNAMet with the anticodon f5CAU as revealed with a mitochondrial in vitro translation system.线粒体体外翻译系统揭示，线粒体携带反密码子f5CAU的甲硫氨酸转运RNA（tRNAMet）将AUA密码子非常规解码为甲硫氨酸。
Nucleic Acids Res. 2009 Apr;37(5):1616-27. doi: 10.1093/nar/gkp001. Epub 2009 Jan 16.
9
Yeast mitochondrial methionine initiator tRNA: characterization and nucleotide sequence.酵母线粒体甲硫氨酸起始tRNA：特性与核苷酸序列
Nucleic Acids Res. 1980 Apr 11;8(7):1445-57. doi: 10.1093/nar/8.7.1445.
10
Identification and characterization of a tRNA decoding the rare AUA codon in Haloarcula marismortui.嗜盐栖热放线菌中解码稀有AUA密码子的tRNA的鉴定与表征
RNA. 2008 Jan;14(1):117-26. doi: 10.1261/rna.795508. Epub 2007 Nov 12.
引用本文的文献
1
Diversity of the biosynthesis pathway for threonylcarbamoyladenosine (t(6)A), a universal modification of tRNA.苏氨酰氨甲酰腺苷（t(6)A）生物合成途径的多样性，t(6)A是tRNA的一种普遍修饰。
RNA Biol. 2014;11(12):1529-39. doi: 10.4161/15476286.2014.992277.
2
Cross kingdom functional conservation of the core universally conserved threonylcarbamoyladenosine tRNA synthesis enzymes.核心普遍保守的苏氨甲酰腺苷tRNA合成酶的跨物种功能保守性。
Eukaryot Cell. 2014 Sep;13(9):1222-31. doi: 10.1128/EC.00147-14. Epub 2014 Jul 18.
3
Decoding mechanism of non-universal genetic codes in Loligo bleekeri mitochondria.破译斑江珧鱼线粒体中非通用遗传密码的机制。
J Biol Chem. 2013 Mar 15;288(11):7645-7652. doi: 10.1074/jbc.M112.439554. Epub 2013 Jan 28.
4
Use of a deviant mitochondrial genetic code in yellow-green algae as a landmark for segregating members within the phylum.在黄绿藻中使用异常线粒体遗传密码作为划分该门内成员的一个标志。
J Mol Evol. 1997 Aug;45(2):119-24. doi: 10.1007/pl00006210.
5
Induction of liver alpha-1 acid glycoprotein gene expression involves both positive and negative transcription factors.肝脏α-1酸性糖蛋白基因表达的诱导涉及正性和负性转录因子。
Mol Cell Biol. 1993 Jan;13(1):432-42. doi: 10.1128/mcb.13.1.432-442.1993.
6
Transcription initiation and RNA processing of a yeast mitochondrial tRNA gene cluster.酵母线粒体tRNA基因簇的转录起始与RNA加工
Nucleic Acids Res. 1987 Sep 25;15(18):7381-94. doi: 10.1093/nar/15.18.7381.
7
Evolution of the mitochondrial genetic code. II. Reassignment of codon AUA from isoleucine to methionine.线粒体遗传密码的进化。II. 密码子AUA从异亮氨酸重新分配为甲硫氨酸。
J Mol Evol. 1989 Nov;29(5):373-80. doi: 10.1007/BF02602907.
8
Codon reassignment (codon capture) in evolution.进化中的密码子重新分配（密码子捕获）。
J Mol Evol. 1989 Apr;28(4):271-8. doi: 10.1007/BF02103422.
9
Compilation of tRNA sequences and sequences of tRNA genes.tRNA序列及tRNA基因序列的汇编。
Nucleic Acids Res. 1991 Apr 25;19 Suppl(Suppl):2127-71. doi: 10.1093/nar/19.suppl.2127.
本文引用的文献
1
C-A base pairs in transfer ribonucleic acids and codon-anticodon complexes.转运核糖核酸及密码子-反密码子复合物中的C-A碱基对。
J Theor Biol. 1981 Sep 21;92(2):163-80. doi: 10.1016/0022-5193(81)90390-8.
2
Sequence and organization of the human mitochondrial genome.人类线粒体基因组的序列与组织
Nature. 1981 Apr 9;290(5806):457-65. doi: 10.1038/290457a0.
3
The mosaic organization of the apocytochrome b gene of Aspergillus nidulans revealed by DNA sequencing.通过DNA测序揭示的构巢曲霉脱辅基细胞色素b基因的镶嵌组织。
Cell. 1981 Nov;27(1 Pt 2):4-11. doi: 10.1016/0092-8674(81)90354-8.
4
5
Primary structure of AUA-specific isoleucine transfer ribonucleic acid from Escherichia coli.来自大肠杆菌的AUA特异性异亮氨酸转移核糖核酸的一级结构。
Biochemistry. 1980 May 13;19(10):2085-9. doi: 10.1021/bi00551a013.
6
Nucleotide sequence of a spinach chloroplast isoleucine tRNA.菠菜叶绿体异亮氨酸转运核糖核酸的核苷酸序列。
J Biol Chem. 1982 Oct 10;257(19):11195-8.
7
Structure and properties of a bovine liver UGA suppressor serine tRNA with a tryptophan anticodon.具有色氨酸反密码子的牛肝UGA抑制性丝氨酸tRNA的结构与性质
Cell. 1981 Aug;25(2):497-506. doi: 10.1016/0092-8674(81)90068-4.
8
The primary structures of three yeast mitochondrial serine tRNA isoacceptors.三种酵母线粒体丝氨酸tRNA同工受体的一级结构。
Biochimie. 1982 Nov-Dec;64(11-12):1073-9. doi: 10.1016/s0300-9084(82)80389-1.
9
Location and structure of the var1 gene on yeast mitochondrial DNA: nucleotide sequence of the 40.0 allele.酵母线粒体DNA上var1基因的定位与结构：40.0等位基因的核苷酸序列
Cell. 1982 Sep;30(2):617-26. doi: 10.1016/0092-8674(82)90258-6.
10
Yeast mitochondrial methionine initiator tRNA: characterization and nucleotide sequence.酵母线粒体甲硫氨酸起始tRNA：特性与核苷酸序列
Nucleic Acids Res. 1980 Apr 11;8(7):1445-57. doi: 10.1093/nar/8.7.1445.
Zotero 插件