Suppr超能文献

从[具体物质]形成依赖于丙酮酰的脯氨酸还原酶Prd需要成熟酶PrdH。

Formation of the pyruvoyl-dependent proline reductase Prd from requires the maturation enzyme PrdH.

作者信息

Behlendorf Christian, Diwo Maurice, Neumann-Schaal Meina, Fuchs Manuela, Körner Dominik, Jänsch Lothar, Faber Franziska, Blankenfeldt Wulf

机构信息

Department Structure and Function of Proteins, Helmholtz Centre for Infection Research, 38124 Braunschweig, Germany.

Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, 38124 Braunschweig, Germany.

出版信息

PNAS Nexus. 2024 Jun 25;3(7):pgae249. doi: 10.1093/pnasnexus/pgae249. eCollection 2024 Jul.

Abstract

Stickland fermentation, the coupled oxidation and reduction of amino acid pairs, is a major pathway for obtaining energy in the nosocomial bacterium . D-proline is the preferred substrate for the reductive path, making it not only a key component of the general metabolism but also impacting on the expression of the clostridial toxins TcdA and TcdB. D-proline reduction is catalyzed by the proline reductase Prd, which belongs to the pyruvoyl-dependent enzymes. These enzymes are translated as inactive proenzymes and require subsequent processing to install the covalently bound pyruvate. Whereas pyruvoyl formation by intramolecular serinolysis has been studied in unrelated enzymes, details about pyruvoyl generation by cysteinolysis as in Prd are lacking. Here, we show that Prd maturation requires a small dimeric protein that we have named PrdH. PrdH (CD630_32430) is co-encoded with the PrdA and PrdB subunits of Prd and also found in species producing similar reductases. By producing stable variants of PrdA and PrdB, we demonstrate that PrdH-mediated cleavage and pyruvoyl formation in the PrdA subunit requires PrdB, which can be harnessed to produce active recombinant Prd for subsequent analyses. We further created PrdA- and PrdH-mutants to get insight into the interaction of the components and into the processing reaction itself. Finally, we show that deletion of renders insensitive to proline concentrations in culture media, suggesting that this processing factor is essential for proline utilization. Due to the link between Stickland fermentation and pathogenesis, we suggest PrdH may be an attractive target for drug development.

摘要

斯蒂克兰德发酵,即氨基酸对的偶联氧化和还原,是医院细菌获取能量的主要途径。D-脯氨酸是还原途径的首选底物,这使其不仅是一般代谢的关键组成部分,还会影响梭菌毒素TcdA和TcdB的表达。D-脯氨酸的还原由脯氨酸还原酶Prd催化,Prd属于依赖丙酮酰的酶。这些酶最初被翻译为无活性的酶原,需要后续加工才能安装共价结合的丙酮酸。虽然分子内丝氨酸分解形成丙酮酰已在不相关的酶中得到研究,但关于像Prd中通过半胱氨酸分解产生丙酮酰的细节尚不清楚。在这里,我们表明Prd的成熟需要一种我们命名为PrdH的小的二聚体蛋白。PrdH(CD630_32430)与Prd的PrdA和PrdB亚基共同编码,并且在产生类似还原酶的物种中也有发现。通过产生PrdA和PrdB的稳定变体,我们证明PrdH介导的PrdA亚基中的切割和丙酮酰形成需要PrdB,这可用于产生有活性的重组Prd以进行后续分析。我们进一步创建了PrdA和PrdH突变体,以深入了解各组分之间的相互作用以及加工反应本身。最后,我们表明缺失 使 对培养基中的脯氨酸浓度不敏感,这表明这种加工因子对于脯氨酸的利用至关重要。由于斯蒂克兰德发酵与发病机制之间的联系,我们认为PrdH可能是药物开发的一个有吸引力的靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d4d9/11229817/833d1851cfdc/pgae249f1.jpg

相似文献

1
Formation of the pyruvoyl-dependent proline reductase Prd from requires the maturation enzyme PrdH.
PNAS Nexus. 2024 Jun 25;3(7):pgae249. doi: 10.1093/pnasnexus/pgae249. eCollection 2024 Jul.
2
Analysis of proline reduction in the nosocomial pathogen Clostridium difficile.
J Bacteriol. 2006 Dec;188(24):8487-95. doi: 10.1128/JB.01370-06. Epub 2006 Oct 13.
3
d-Proline Reductase Underlies Proline-Dependent Growth of Clostridioides difficile.
J Bacteriol. 2022 Aug 16;204(8):e0022922. doi: 10.1128/jb.00229-22. Epub 2022 Jul 13.
4
Characterizing metabolic drivers of infection with activity-based hydrazine probes.
Front Pharmacol. 2023 Jan 26;14:1074619. doi: 10.3389/fphar.2023.1074619. eCollection 2023.
8
Proline-dependent regulation of Clostridium difficile Stickland metabolism.
J Bacteriol. 2013 Feb;195(4):844-54. doi: 10.1128/JB.01492-12. Epub 2012 Dec 7.
10
Metabolic Reprogramming of During the Stationary Phase With the Induction of Toxin Production.
Front Microbiol. 2018 Aug 21;9:1970. doi: 10.3389/fmicb.2018.01970. eCollection 2018.

引用本文的文献

1
Structural basis for psilocybin biosynthesis.
Nat Commun. 2025 Mar 22;16(1):2827. doi: 10.1038/s41467-025-58239-x.

本文引用的文献

1
Using evolutionary data to make sense of macromolecules with a "face-lifted" ConSurf.
Protein Sci. 2023 Mar;32(3):e4582. doi: 10.1002/pro.4582.
2
d-Proline Reductase Underlies Proline-Dependent Growth of Clostridioides difficile.
J Bacteriol. 2022 Aug 16;204(8):e0022922. doi: 10.1128/jb.00229-22. Epub 2022 Jul 13.
3
ColabFold: making protein folding accessible to all.
Nat Methods. 2022 Jun;19(6):679-682. doi: 10.1038/s41592-022-01488-1. Epub 2022 May 30.
4
Clostridium sporogenes uses reductive Stickland metabolism in the gut to generate ATP and produce circulating metabolites.
Nat Microbiol. 2022 May;7(5):695-706. doi: 10.1038/s41564-022-01109-9. Epub 2022 May 2.
5
Highly accurate protein structure prediction with AlphaFold.
Nature. 2021 Aug;596(7873):583-589. doi: 10.1038/s41586-021-03819-2. Epub 2021 Jul 15.
6
An RNA-centric global view of reveals broad activity of Hfq in a clinically important gram-positive bacterium.
Proc Natl Acad Sci U S A. 2021 Jun 22;118(25). doi: 10.1073/pnas.2103579118.
8
The physiology and evolution of microbial selenium metabolism.
Metallomics. 2021 May 31;13(6). doi: 10.1093/mtomcs/mfab024.
9
Introducing Selenocysteine into Recombinant Proteins in Escherichia coli.
Curr Protoc. 2021 Feb;1(2):e54. doi: 10.1002/cpz1.54.
10
A novel conjugal donor strain for improved DNA transfer into Clostridium spp.
Anaerobe. 2019 Oct;59:184-191. doi: 10.1016/j.anaerobe.2019.06.020. Epub 2019 Jun 30.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验