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儿科炎症性肠病的组织病理学成像和临床数据,包括缓解状态。

Histopathology imaging and clinical data including remission status in pediatric inflammatory bowel disease.

机构信息

Research Institute, Children's Health Orange County (CHOC), Orange, CA, USA.

Department of Pathology, CHOC, Orange, CA, USA.

出版信息

Sci Data. 2024 Jul 11;11(1):761. doi: 10.1038/s41597-024-03592-7.

DOI:10.1038/s41597-024-03592-7
PMID:38992012
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11239805/
Abstract

The incidence of inflammatory bowel disease (IBD) is increasing annually. Children with IBD often suffer significant morbidity due to physical and emotional effects of the disease and treatment. Corticosteroids, often a component of therapy, carry undesirable side effects with long term use. Steroid-free remission has become a standard for care-quality improvement. Anticipating therapeutic outcomes is difficult, with treatments often leveraged in a trial-and-error fashion. Artificial intelligence (AI) has demonstrated success in medical imaging classification tasks. Predicting patients who will attain remission will help inform treatment decisions. The provided dataset comprises 951 tissue section scans (167 whole-slides) obtained from 18 pediatric IBD patients. Patient level structured data include IBD diagnosis, 12- and 52-week steroid use and name, and remission status. Each slide is labelled with biopsy site and normal or abnormal classification per the surgical pathology report. Each tissue section scan from an abnormal slide is further classified by an experienced pathologist. Researchers utilizing this dataset may select from the provided outcomes or add labels and annotations from their own institutions.

摘要

炎症性肠病(IBD)的发病率正在逐年上升。患有 IBD 的儿童常常因疾病和治疗的身体和情绪影响而遭受严重的发病。皮质类固醇通常是治疗的组成部分,但长期使用会带来不良的副作用。无类固醇缓解已成为改善护理质量的标准。由于治疗方法通常是试错式的,因此预测治疗效果具有一定难度。人工智能(AI)在医学影像分类任务中已取得成功。预测能够达到缓解的患者将有助于为治疗决策提供信息。提供的数据集包含 18 名儿科 IBD 患者的 951 个组织切片扫描(167 个全切片)。患者水平的结构化数据包括 IBD 诊断、12 周和 52 周皮质类固醇的使用情况和名称以及缓解状态。根据外科病理报告,每张幻灯片均标记有活检部位和正常或异常分类。异常幻灯片上的每个组织切片扫描均由经验丰富的病理学家进一步分类。研究人员可以从提供的结果中进行选择,或者从自己的机构添加标签和注释。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f890/11239805/efe520696ba5/41597_2024_3592_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f890/11239805/efe520696ba5/41597_2024_3592_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f890/11239805/efe520696ba5/41597_2024_3592_Fig1_HTML.jpg

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本文引用的文献

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A Systematic Review of Artificial Intelligence and Machine Learning Applications to Inflammatory Bowel Disease, with Practical Guidelines for Interpretation.人工智能和机器学习在炎症性肠病中的应用的系统评价,以及解释的实用指南。
Inflamm Bowel Dis. 2022 Oct 3;28(10):1573-1583. doi: 10.1093/ibd/izac115.
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Developing image analysis pipelines of whole-slide images: Pre- and post-processing.开发全切片图像的图像分析流程:预处理和后处理。
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An International Consensus to Standardize Integration of Histopathology in Ulcerative Colitis Clinical Trials.
溃疡性结肠炎临床试验中组织病理学整合的国际共识标准化
Gastroenterology. 2021 Jun;160(7):2291-2302. doi: 10.1053/j.gastro.2021.02.035. Epub 2021 Feb 19.
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Potential for Standardization and Automation for Pathology and Endoscopy in Inflammatory Bowel Disease.炎症性肠病病理和内镜标准化和自动化的潜力。
Inflamm Bowel Dis. 2020 Sep 18;26(10):1490-1497. doi: 10.1093/ibd/izaa211.
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Treat-to-Target in Pediatric Inflammatory Bowel Disease: What Does the Evidence Say?儿童炎症性肠病的目标治疗:证据说了什么?
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Automatic detection of erosions and ulcerations in wireless capsule endoscopy images based on a deep convolutional neural network.基于深度卷积神经网络的无线胶囊内镜图像中糜烂和溃疡的自动检测。
Gastrointest Endosc. 2019 Feb;89(2):357-363.e2. doi: 10.1016/j.gie.2018.10.027. Epub 2018 Oct 25.
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Fully automated diagnostic system with artificial intelligence using endocytoscopy to identify the presence of histologic inflammation associated with ulcerative colitis (with video).基于内镜下细胞学检查的人工智能全自动诊断系统用于识别与溃疡性结肠炎相关的组织学炎症(附视频)。
Gastrointest Endosc. 2019 Feb;89(2):408-415. doi: 10.1016/j.gie.2018.09.024. Epub 2018 Sep 27.
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Sci Rep. 2018 Feb 21;8(1):3395. doi: 10.1038/s41598-018-21758-3.
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