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干血样总DNA提取的优化

Optimization of Total DNA Extraction from Dried Blood Samples.

作者信息

Samsonova Jeanne V, Saushkin Nikolay Yu, Voronkova Valery N, Stolpovsky Yuri A, Piskunov Aleksei K

机构信息

Faculty of Chemistry, Lomonosov Moscow State University, Moscow, 119991, Russia.

Vavilov Institute of General Genetics, Moscow, 119991, Russia.

出版信息

Biochem Genet. 2024 Jul 12. doi: 10.1007/s10528-024-10882-7.

DOI:10.1007/s10528-024-10882-7
PMID:38995529
Abstract

While dried blood spots are a convenient source of genetic material, they are usually associated with a lower DNA yield than from a native sample. The study evaluated the DNA yield from dried blood samples prepared on glass fibre and cellulose membranes and investigated the reasons for the yield reduction. The extraction of total DNA from membrane-dried blood samples was optimized by spin-column extraction method. It was shown that preliminary short-term (20 min) solubilization of a dried matrix in an aqueous medium, followed by standard extraction protocols for the mixture of the eluate with membranes, provides the highest DNA yield. The yield of DNA from a glass fibre membrane was 40-50% lower compared to a native sample, but on average, two times higher than from a conventional cellulose membrane (filter paper). The reduction of DNA yield when using a dried sample was found to be due to partial retention of nucleic acids by the membrane material during the lysis stage.

摘要

虽然干血斑是一种方便的遗传物质来源,但与天然样本相比,它们通常产生的DNA产量较低。该研究评估了在玻璃纤维和纤维素膜上制备的干血样本的DNA产量,并调查了产量降低的原因。通过旋转柱提取法优化了从膜干血样本中提取总DNA的方法。结果表明,将干燥的基质在水性介质中进行初步短期(20分钟)溶解,然后对洗脱液与膜的混合物采用标准提取方案,可提供最高的DNA产量。与天然样本相比,玻璃纤维膜的DNA产量低40 - 50%,但平均而言,比传统纤维素膜(滤纸)高出两倍。研究发现,使用干样本时DNA产量降低是由于在裂解阶段核酸被膜材料部分保留所致。

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本文引用的文献

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Biopreserv Biobank. 2024 Oct;22(5):486-496. doi: 10.1089/bio.2023.0057. Epub 2023 Nov 22.
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The current status and trends of DNA extraction.DNA 提取的现状和趋势。
Bioessays. 2023 Aug;45(8):e2200242. doi: 10.1002/bies.202200242. Epub 2023 Jun 20.
3
Dried Blood Spots technology for veterinary applications and biological investigations: technical aspects, retrospective analysis, ongoing status and future perspectives.
用于兽医应用和生物研究的干血斑技术:技术方面、回顾性分析、现状和未来展望。
Vet Res Commun. 2022 Sep;46(3):655-698. doi: 10.1007/s11259-022-09957-w. Epub 2022 Jun 30.
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Dried matrix spots: an evolving trend in the toxicological field.干基质斑:毒理学领域的一种发展趋势。
Forensic Sci Med Pathol. 2022 Mar;18(1):86-102. doi: 10.1007/s12024-021-00434-5. Epub 2022 Feb 16.
5
Comparison of four extraction methods for the detection of hepatitis B virus DNA in dried blood spot samples.四种提取方法检测干血斑样本中乙型肝炎病毒 DNA 的比较。
Microbiologyopen. 2021 Mar;10(2):e1161. doi: 10.1002/mbo3.1161.
6
Comparative performance of PCR using DNA extracted from dried blood spots and whole blood samples for malaria diagnosis: a meta-analysis.基于聚合酶链反应的干血斑和全血样本用于疟疾诊断的比较性能:荟萃分析。
Sci Rep. 2021 Mar 1;11(1):4845. doi: 10.1038/s41598-021-83977-5.
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Assessing the Performance of Dried-Blood-Spot DNA Extraction Methods in Next Generation Sequencing.评估下一代测序中干血斑DNA提取方法的性能
Int J Neonatal Screen. 2020 Jun;6(2). doi: 10.3390/ijns6020036. Epub 2020 Apr 30.
8
Optimization of extraction of genomic DNA from archived dried blood spot (DBS): potential application in epidemiological research & bio banking.存档干血斑(DBS)基因组DNA提取方法的优化:在流行病学研究和生物样本库中的潜在应用
Gates Open Res. 2019 Nov 14;2:57. doi: 10.12688/gatesopenres.12855.2. eCollection 2018.
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Comparison between different methods of DNA isolation from dried blood spots for determination of malaria to determine specificity and cost effectiveness.比较从干血斑中分离DNA用于疟疾检测的不同方法,以确定其特异性和成本效益。
J Parasit Dis. 2019 Sep;43(3):337-342. doi: 10.1007/s12639-019-01136-0. Epub 2019 Jun 24.
10
Comparative analysis of three methods from dried blood spots for expeditious DNA extraction from mosquitoes; suitable for PCR based techniques.三种从干血斑中快速提取蚊虫DNA方法的比较分析;适用于基于PCR的技术。
Mol Biol Rep. 2019 Feb;46(1):151-160. doi: 10.1007/s11033-018-4456-5. Epub 2018 Nov 16.