Zou Dayu, Zhang Cuijing, Liu Yang, Li Meng
Archaeal Biology Center, Institute for Advanced Study, Shenzhen University, Shenzhen, 518060, China.
Institute for Advanced Study, Shenzhen Key Laboratory of Marine Microbiome Engineering, Shenzhen University, Shenzhen, 518060, China.
Environ Microbiome. 2024 Jul 13;19(1):47. doi: 10.1186/s40793-024-00593-2.
Myxococcota, characterized by their distinct social lifestyles, are widely distributed micro-predators in global sediments. They can feed on a wide range of bacterial, archaeal, and fungal prey. Myxococcota are capable of producing diverse secondary metabolites, playing key roles in microbial food webs, and regulating the microbial community structures in different ecosystems. However, Myxococcota are rarely pure cultured due to the challenging and stringent culturing conditions. Their natural distribution, niche differentiation, and predator-prey relationships in a specific habitat are poorly understood.
In this study, we conducted a comprehensive analysis of the 16S rRNA gene sequence data from public databases and our collection. We compared the abundance, diversity, and distribution patterns of Myxococcota in various habitats, with a specific focus on mangroves. We found that Myxococcota accounted for 1.45% of the total prokaryotes in global sediments based on the abundance of 16S rRNA genes. Myxococcota are abundant and diverse in mangrove sediments. They tend to be more generalistic in mangroves than in other habitats due to their wide niche breadth. Besides, the deterministic processes (variable selection) influenced the assembly of mangrove Myxococcota communities significantly more than stochastic processes. Further, we determined that environmental factors explained a greater amount of total community variation in mangrove Myxococcota than geographical variables (latitude and sediment depth). In the end, through the analysis of microbial co-occurrence networks, Myxococcota emerges as a key component and functions as a connector in the mangrove microbial community.
Our study enhances comprehension of mangrove Myxococcota's biogeography, assembly patterns, driving factors, and co-occurrence relationships, as well as highlights their unique niche and ecological importance in mangrove sediments.
黏球菌门以其独特的社会生活方式为特征,是全球沉积物中广泛分布的微捕食者。它们能够捕食多种细菌、古菌和真菌猎物。黏球菌门能够产生多种次生代谢产物,在微生物食物网中发挥关键作用,并调节不同生态系统中的微生物群落结构。然而,由于培养条件具有挑战性且严格,黏球菌门很少能够纯培养。人们对它们在特定栖息地的自然分布、生态位分化以及捕食者 - 猎物关系了解甚少。
在本研究中,我们对来自公共数据库和我们自己收集的16S rRNA基因序列数据进行了全面分析。我们比较了黏球菌门在各种栖息地中的丰度、多样性和分布模式,特别关注红树林。基于16S rRNA基因的丰度,我们发现黏球菌门在全球沉积物中的原核生物总数中占1.45%。黏球菌门在红树林沉积物中丰富多样。由于其广泛的生态位宽度,它们在红树林中比在其他栖息地更具通用性。此外,确定性过程(变量选择)对红树林黏球菌门群落组装的影响明显大于随机过程。进一步地,我们确定环境因素对红树林黏球菌门群落总变异的解释量大于地理变量(纬度和沉积物深度)。最后,通过对微生物共现网络的分析,黏球菌门成为红树林微生物群落的关键组成部分,并作为连接者发挥作用。
我们的研究增进了对红树林黏球菌门生物地理学、组装模式、驱动因素和共现关系的理解,同时突出了它们在红树林沉积物中的独特生态位和生态重要性。