Li Zhimeng, Zou Dayu, Liu Rulong, Pan Juntong, Huang Junkai, Ma Jun, Huang Liting, He Jiani, Fu Lulu, Zheng Xiaowei, Wang Minxiao, Fang Jiasong, Dong Hailiang, Li Meng, Huang Li, Dai Xin
Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), No. 1119 Haibin Road, Guangzhou 511458, China.
State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, No. 1 West Beichen Road, Beijing 100101, China.
ISME Commun. 2025 Mar 5;5(1):ycaf042. doi: 10.1093/ismeco/ycaf042. eCollection 2025 Jan.
Seamounts are critical marine biodiversity hot spots, while the metabolic activity of their microbial community remains largely unknown. In this study, we investigated the diversity and activity of free-living and particle-attached microorganisms in the surface, middle, and bottom layers of seawater at the Zhenbei seamount in the South China Sea using omics approaches, including 16S ribosomal RNA (rRNA)/16S rDNA ratio analysis. Over 20 phyla were detected, with , , , , , and being predominant. Surprisingly, and , the two well-known predatory bacteria, exhibited exceptionally higher rRNA/rDNA ratios than the other phyla, with rRNA abundances being 10- or even 200-fold higher than their rDNA abundances. These metabolically active predatory bacteria are mainly uncultured species. A total of 23 metagenome-assembled genomes (MAGs) and 12 MAGs were assembled. The most highly overexpressed genes frequently detected in these MAGs were those that encode flagellum and pilus proteins as well as T4-like virus tail tube protein, indicating that these predator bacteria were likely active in hunting. Our results suggest that seamounts may serve as hunting grounds for predatory bacteria, which may be involved in controlling the flows of elements and energy in the seamount microbial communities and, thus, in shaping the seamount ecosystems.
海山是重要的海洋生物多样性热点地区,但其微生物群落的代谢活动在很大程度上仍不为人知。在本研究中,我们采用组学方法,包括16S核糖体RNA(rRNA)/16S核糖体DNA(rDNA)比率分析,调查了中国南海镇北海山海水表层、中层和底层中自由生活和附着于颗粒上的微生物的多样性和活性。检测到超过20个门,其中 、 、 、 、 和 占主导地位。令人惊讶的是,两种著名的捕食性细菌 和 ,其rRNA/rDNA比率比其他门异常高,rRNA丰度比其rDNA丰度高10倍甚至200倍。这些代谢活跃的捕食性细菌主要是未培养的物种。总共组装了23个宏基因组组装基因组(MAG)和12个 MAG。在这些MAG中频繁检测到的表达量最高的基因是那些编码鞭毛和菌毛蛋白以及T4样病毒尾管蛋白的基因,这表明这些捕食性细菌可能在捕食中活跃。我们的结果表明,海山可能是捕食性细菌的狩猎场,它们可能参与控制海山微生物群落中的元素和能量流动,从而塑造海山生态系统。